Detailed information of deep learning profile BP000228.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000228.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR343RJH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.13 0.04 0.06 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3854 3841 3951 4526 4404 4043 4147 4202 3668 4396 4236 3497 3630 3276 5005 5906 2282 6884 2081 1132 1713 1503 397 5259 246 162 1197 6125 667 2680 203 1230 3127 4173 6078 4562 5012 4401 4052 3991 4374 4155 5055 7082 5265 3448 3892 3826 4721 4876 ]
C [ 4853 4743 4819 4369 4218 4770 4841 4825 4814 3353 3286 4589 4813 7050 4079 4723 5211 2513 5175 8748 1248 14025 16441 9989 11083 16935 1794 1712 6298 3060 293 1417 7451 5600 2938 4409 3792 4174 4314 4109 3480 3132 4252 4023 4342 4358 3443 5874 6046 4520 ]
G [ 4432 4513 4368 4201 4203 4236 4234 4818 3927 5387 6238 5492 4686 3424 3614 3794 4226 5400 8324 1479 11716 1356 303 961 228 113 617 6734 9188 1237 16368 13012 2253 3988 5906 4667 4313 4560 4902 5249 6105 7017 4278 3112 3719 3838 5562 4553 3362 4298 ]
T [ 4375 4417 4376 4418 4689 4465 4292 3669 5105 4378 3754 3936 4385 3764 4816 3091 5795 2717 1934 6155 2837 630 373 1305 5957 304 13906 2943 1361 10537 650 1855 4683 3753 2592 3876 4397 4379 4246 4165 3555 3210 3929 3297 4188 5870 4617 3261 3385 3820 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.01 -0.04 0.02 -0.06 -0.03 -0.03 0.04 -0.05 -0.03 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.00 0.04 0.10 -0.01 0.10 0.14 0.08 0.11 0.14 0.02 -0.01 0.04 0.07 -0.02 -0.02 0.05 0.03 -0.00 0.01 0.00 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.05 -0.01 0.10 -0.02 -0.04 -0.00 -0.07 -0.02 -0.00 0.05 0.09 -0.03 0.15 0.09 -0.01 0.03 0.04 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.03 -0.01 -0.02 0.01 -0.01 -0.05 -0.04 -0.05 0.04 -0.04 0.08 -0.01 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.02 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1000

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 670

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 651

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 526

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 483

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 461

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 231

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 184

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages