Detailed information of deep learning profile BP000228.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000228.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR343RJH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.06 0.04 0.13 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3820 3385 3261 4617 5870 4188 3297 3929 3210 3555 4165 4246 4379 4397 3876 2592 3753 4683 1855 650 10537 1361 2943 13906 304 5957 1305 373 630 2837 6155 1934 2717 5795 3091 4816 3764 4385 3936 3754 4378 5105 3669 4292 4465 4689 4418 4376 4417 4375 ]
C [ 4298 3362 4553 5562 3838 3719 3112 4278 7017 6105 5249 4902 4560 4313 4667 5906 3988 2253 13012 16368 1237 9188 6734 617 113 228 961 303 1356 11716 1479 8324 5400 4226 3794 3614 3424 4686 5492 6238 5387 3927 4818 4234 4236 4203 4201 4368 4513 4432 ]
G [ 4520 6046 5874 3443 4358 4342 4023 4252 3132 3480 4109 4314 4174 3792 4409 2938 5600 7451 1417 293 3060 6298 1712 1794 16935 11083 9989 16441 14025 1248 8748 5175 2513 5211 4723 4079 7050 4813 4589 3286 3353 4814 4825 4841 4770 4218 4369 4819 4743 4853 ]
T [ 4876 4721 3826 3892 3448 5265 7082 5055 4155 4374 3991 4052 4401 5012 4562 6078 4173 3127 1230 203 2680 667 6125 1197 162 246 5259 397 1503 1713 1132 2081 6884 2282 5906 5005 3276 3630 3497 4236 4396 3668 4202 4147 4043 4404 4526 3951 3841 3854 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.01 0.08 -0.04 0.04 -0.05 -0.04 -0.05 -0.01 0.01 -0.02 -0.01 0.03 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.04 0.03 -0.01 0.09 0.15 -0.03 0.09 0.05 -0.00 -0.02 -0.07 -0.00 -0.04 -0.02 0.10 -0.01 0.05 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.00 0.01 -0.00 0.03 0.05 -0.02 -0.02 0.07 0.04 -0.01 0.02 0.14 0.11 0.08 0.14 0.10 -0.01 0.10 0.04 -0.00 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.03 -0.05 0.04 -0.03 -0.03 -0.06 0.02 -0.04 0.01 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1000

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 670

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 651

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 526

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 483

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 461

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 231

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 184

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages