Detailed information of deep learning profile BP000227.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000227.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR341OQG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.11 0.18 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.18 0.09 0.06 0.14 0.08 0.00 0.04 0.01 -0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 4064 3638 3300 4703 6358 4589 3285 4291 3107 3833 4420 4610 4330 4394 3910 2565 3761 5276 1674 780 10831 1553 2608 13704 272 4401 2066 723 1721 3751 5605 2858 3483 5468 3672 4800 4017 4597 4193 4141 4670 4932 4243 4487 4594 4461 4531 4513 4509 4450 ]
C [ 3805 2823 4160 5314 3582 3385 2749 4040 7468 6058 5230 4546 4308 4015 4861 5783 4072 1988 13409 15859 1231 9070 6491 380 71 152 814 660 1897 9237 2514 6946 4752 3769 3502 3412 3514 4279 4617 5135 4505 3883 4208 3868 3967 4118 4112 4000 4045 4158 ]
G [ 4176 5692 5905 3055 3688 3748 3391 3612 2540 2859 3483 3875 3579 3268 3791 2475 5162 6619 1062 288 1779 5898 1266 1811 16656 12096 9692 14700 11628 1743 7019 4390 2775 4743 4347 3950 5899 4333 4500 3523 3721 4222 4259 4411 4409 4089 3974 4346 4469 4278 ]
T [ 5119 5011 3799 4092 3536 5442 7739 5221 4049 4414 4031 4133 4947 5487 4602 6341 4169 3281 1019 237 3323 643 6799 1269 165 515 4592 1081 1918 2433 2026 2970 6154 3184 5643 5002 3734 3955 3854 4365 4268 4127 4454 4398 4194 4496 4547 4305 4141 4278 ]

Hypothetical CWM

   
A [ 0.01 0.01 0.00 -0.00 -0.03 -0.02 0.03 -0.01 -0.03 0.04 -0.02 -0.02 0.10 -0.07 0.02 -0.05 -0.06 -0.05 -0.01 0.01 -0.01 -0.01 0.02 -0.01 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.02 0.13 0.19 -0.03 0.12 0.05 -0.03 -0.04 -0.09 -0.02 -0.04 -0.03 0.09 -0.01 0.04 0.03 0.02 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.04 0.05 -0.05 -0.04 0.06 0.05 -0.03 0.02 0.19 0.13 0.10 0.16 0.10 -0.02 0.08 0.02 -0.01 0.02 0.01 ]
T [ -0.00 0.01 0.01 0.01 0.02 -0.01 -0.02 -0.05 -0.09 -0.02 -0.07 0.06 -0.03 -0.04 -0.06 0.01 -0.04 -0.00 -0.03 -0.04 -0.01 0.02 -0.02 0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1229

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 302

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages