Detailed information of deep learning profile BP000227.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000227.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR341OQG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 -0.00 0.01 0.04 0.00 0.08 0.14 0.06 0.09 0.18 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.18 0.11 -0.00 0.01 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4278 4141 4305 4547 4496 4194 4398 4454 4127 4268 4365 3854 3955 3734 5002 5643 3184 6154 2970 2026 2433 1918 1081 4592 515 165 1269 6799 643 3323 237 1019 3281 4169 6341 4602 5487 4947 4133 4031 4414 4049 5221 7739 5442 3536 4092 3799 5011 5119 ]
C [ 4278 4469 4346 3974 4089 4409 4411 4259 4222 3721 3523 4500 4333 5899 3950 4347 4743 2775 4390 7019 1743 11628 14700 9692 12096 16656 1811 1266 5898 1779 288 1062 6619 5162 2475 3791 3268 3579 3875 3483 2859 2540 3612 3391 3748 3688 3055 5905 5692 4176 ]
G [ 4158 4045 4000 4112 4118 3967 3868 4208 3883 4505 5135 4617 4279 3514 3412 3502 3769 4752 6946 2514 9237 1897 660 814 152 71 380 6491 9070 1231 15859 13409 1988 4072 5783 4861 4015 4308 4546 5230 6058 7468 4040 2749 3385 3582 5314 4160 2823 3805 ]
T [ 4450 4509 4513 4531 4461 4594 4487 4243 4932 4670 4141 4193 4597 4017 4800 3672 5468 3483 2858 5605 3751 1721 723 2066 4401 272 13704 2608 1553 10831 780 1674 5276 3761 2565 3910 4394 4330 4610 4420 3833 3107 4291 3285 4589 6358 4703 3300 3638 4064 ]

Hypothetical CWM

   
A [ 0.02 -0.02 0.02 -0.01 -0.04 -0.03 -0.00 -0.04 0.01 -0.06 -0.04 -0.03 0.06 -0.07 -0.02 -0.09 -0.05 -0.02 -0.01 0.02 0.01 0.01 0.01 -0.00 ]
C [ 0.01 0.02 -0.01 0.02 0.08 -0.02 0.10 0.16 0.10 0.13 0.19 0.02 -0.03 0.05 0.06 -0.04 -0.05 0.05 0.04 -0.01 0.01 0.00 0.01 0.00 ]
G [ 0.01 0.02 0.03 0.04 -0.01 0.09 -0.03 -0.04 -0.02 -0.09 -0.04 -0.03 0.05 0.12 -0.03 0.19 0.13 -0.02 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.05 -0.06 -0.05 0.02 -0.07 0.10 -0.02 -0.02 0.04 -0.03 -0.01 0.03 -0.02 -0.03 -0.00 0.00 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1229

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 302

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages