Detailed information of deep learning profile BP000226.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000226.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR336VBV
Model: BPNet
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Contribution weight matrix (CWM)

A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.14 0.06 0.05 0.14 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

A [ 3866 5026 6101 4715 3784 4383 3796 4064 4599 4655 4649 4803 4228 3050 4230 5104 2246 931 11237 1773 3091 14397 400 6610 1534 365 587 3223 7002 1898 2878 6337 3386 5257 4133 4952 4278 4144 4789 5479 4087 4758 4889 5013 4843 4881 4761 4746 4791 4585 ]
C [ 4658 5366 4083 3897 3442 4617 6784 6124 5590 5097 4852 4586 4956 5967 4091 2400 13222 16850 1526 9306 6718 560 121 171 645 131 1132 12783 1397 9566 6045 4395 3893 3649 3571 4839 5629 6593 5630 4203 4962 4399 4271 4489 4533 4569 4765 4634 4600 4750 ]
G [ 5817 3815 4374 4404 4314 4270 3419 3670 4103 4497 4372 3972 4518 3200 5763 7607 1729 539 2666 6750 1857 2129 17978 11622 10457 17902 15379 921 9068 4931 1890 5424 4743 4128 7472 4880 4884 3293 3382 4864 5005 4953 5041 4467 4486 4894 4978 4881 4721 4873 ]
T [ 4363 4497 4146 5688 7164 5434 4705 4846 4412 4455 4831 5343 5002 6487 4620 3593 1507 384 3275 875 7038 1618 205 301 6068 306 1606 1777 1237 2309 7891 2548 6682 5670 3528 4033 3913 4674 4903 4158 4650 4594 4503 4735 4842 4360 4200 4443 4592 4496 ]

Hypothetical CWM

A [ 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.07 -0.04 0.04 -0.06 -0.04 -0.05 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.03 0.03 -0.01 0.09 0.14 -0.01 0.09 0.04 -0.01 -0.02 -0.05 -0.00 -0.04 -0.03 0.12 -0.02 0.06 0.04 0.03 0.01 0.01 0.00 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.05 0.04 -0.01 0.01 0.14 0.10 0.09 0.14 0.11 -0.02 0.11 0.03 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.00 0.02 -0.00 -0.01 -0.02 -0.06 -0.02 -0.05 0.05 -0.02 -0.03 -0.06 0.03 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages