Detailed information of deep learning profile BP000223.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000223.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR329KRE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.10 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.17 0.12 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4450 4014 3931 5196 6439 4829 3911 4456 3871 4190 4752 4896 4964 5157 4556 3074 4466 5246 2300 904 12220 1719 3382 15272 478 7396 1483 387 650 3241 7740 1986 3006 6843 3439 5599 4338 4932 4465 4332 5161 6171 4233 4989 5283 5555 5163 5068 5081 5116 ]
C [ 4709 3866 5100 5950 4296 4085 3563 4929 7371 6571 5824 5401 5100 4657 5110 6436 4364 2506 14194 18287 1300 10216 7035 648 125 245 919 165 1044 13829 1239 9642 6454 4663 4167 3881 3638 5146 6366 7224 6084 4103 5344 4672 4647 4494 4737 4778 5102 4901 ]
G [ 5009 6482 6185 3936 4744 4749 4523 4640 3504 3894 4530 4782 4634 4234 4920 3283 6283 8378 1682 319 3203 6996 1857 2226 18920 11829 11019 18897 16380 930 9499 5848 2266 5807 5100 4329 8032 5418 4961 3138 3442 5272 5342 5415 5071 4638 4587 5350 5263 5200 ]
T [ 5604 5410 4556 4690 4293 6109 7775 5747 5026 5117 4666 4693 5074 5724 5186 6979 4659 3642 1596 262 3049 841 7498 1626 249 302 6351 323 1698 1772 1294 2296 8046 2459 7066 5963 3764 4276 3980 5078 5085 4226 4853 4696 4771 5085 5285 4576 4326 4555 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 -0.02 -0.02 0.02 -0.00 -0.02 0.04 -0.02 -0.01 0.08 -0.03 0.06 -0.06 -0.05 -0.05 -0.01 0.03 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 0.00 ]
C [ 0.02 0.02 0.01 0.03 0.05 0.04 -0.00 0.12 0.18 -0.01 0.12 0.06 0.01 -0.01 -0.05 0.03 -0.03 -0.02 0.14 -0.02 0.08 0.05 0.04 0.02 0.01 0.01 0.02 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.01 0.04 0.06 -0.02 -0.03 0.09 0.05 -0.01 0.04 0.17 0.13 0.10 0.18 0.14 -0.03 0.13 0.05 0.00 0.03 0.02 0.00 0.04 0.02 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.06 -0.03 -0.04 0.06 -0.02 -0.04 -0.07 0.03 -0.03 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 951

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 847

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 642

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 580

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 225

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 30

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages