Detailed information of deep learning profile BP000222.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000222.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR323ZAP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.16 0.06 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4475 4314 4379 5066 4953 4596 4672 4734 4222 4933 4729 3982 4143 3590 5734 6674 2674 7864 2488 1439 1969 1683 416 5738 325 192 1607 7067 810 3427 298 1395 3656 4634 6669 5082 5705 4883 4606 4491 4928 4715 5607 7616 5897 4082 4489 4348 5399 5487 ]
C [ 5204 5328 5319 4820 4790 5275 5390 5391 5231 3859 3667 5197 5378 7969 4391 5190 5819 2435 5523 9308 1253 15567 18453 11183 12516 18956 2284 1933 7160 3175 378 1681 8200 6166 3262 4936 4173 4682 4787 4493 3930 3444 4634 4570 4762 4846 3948 6404 6506 4967 ]
G [ 4992 5063 4932 4722 4621 4664 4729 5305 4401 5997 6889 6099 5189 3848 4011 4189 4685 6117 9470 1778 12864 1498 244 953 211 110 619 7379 9987 1455 18022 14309 2555 4410 6602 5351 4791 5191 5420 5905 6713 7659 4971 3729 4185 4279 5975 5087 3791 4735 ]
T [ 4930 4896 4971 4993 5237 5066 4810 4171 5747 4812 4316 4323 4891 4194 5465 3548 6423 3185 2120 7076 3515 853 488 1727 6549 343 15091 3222 1644 11544 903 2216 5190 4391 3068 4232 4932 4845 4788 4712 4030 3783 4389 3686 4757 6394 5189 3762 3905 4412 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.03 0.00 -0.04 0.02 -0.07 -0.04 -0.03 0.05 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.02 0.00 0.01 ]
C [ 0.02 0.04 0.00 0.02 0.02 -0.01 0.04 0.12 -0.03 0.12 0.16 0.10 0.13 0.17 0.02 -0.03 0.05 0.06 -0.03 -0.03 0.05 0.04 -0.00 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.04 0.06 -0.02 0.12 -0.03 -0.05 -0.01 -0.07 -0.03 -0.01 0.05 0.11 -0.02 0.18 0.12 -0.02 0.03 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.04 -0.05 0.09 -0.02 -0.03 0.03 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 337

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 115

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages