Detailed information of deep learning profile BP000221.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in LNCAP using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000221.1
Cell line/tissue: LNCAP
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR315NAC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.16 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5060 4881 4827 5741 5500 5167 5158 5338 4630 5547 5431 4335 4674 4062 6618 7749 2659 9190 2364 1333 2038 1781 386 7604 247 227 1585 7804 825 3532 273 1708 4123 5124 7641 5649 6280 5573 5199 5087 5638 5442 6293 8460 6654 4624 5082 4957 5944 6168 ]
C [ 5276 5330 5459 4766 4664 5374 5439 5598 5235 3586 3515 5373 5371 8256 4270 5113 5872 1987 5609 10106 715 17788 19965 10768 12718 20201 2221 1931 7795 2757 306 1725 8374 6482 3313 4905 4254 4586 4787 4495 3836 3463 4654 4568 4713 4766 3980 6512 6761 5122 ]
G [ 5091 5171 4956 4744 4815 4604 4822 5391 4387 6314 7290 6310 5354 3953 3890 4227 5111 6598 10766 1242 14885 754 142 826 176 118 623 7580 10524 1341 19735 15169 2573 4461 6538 5413 4850 5299 5645 6086 6826 7761 4976 3656 4144 4387 5983 5116 3765 4740 ]
T [ 5475 5520 5660 5651 5923 5757 5483 4575 6650 5455 4666 4884 5503 4631 6124 3813 7260 3127 2163 8221 3264 579 409 1704 7761 356 16473 3587 1758 13272 588 2300 5832 4835 3410 4935 5518 5444 5271 5234 4602 4236 4979 4218 5391 7125 5857 4317 4432 4872 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.03 -0.07 -0.04 -0.03 0.05 -0.06 -0.03 -0.06 -0.03 -0.01 -0.01 0.02 0.01 0.01 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.04 0.12 -0.02 0.12 0.15 0.10 0.11 0.17 0.02 -0.01 0.05 0.06 -0.02 -0.02 0.05 0.04 0.00 0.01 0.01 0.01 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.04 0.06 -0.02 0.12 -0.03 -0.04 -0.00 -0.06 -0.02 -0.01 0.05 0.11 -0.01 0.17 0.11 -0.01 0.04 0.04 0.02 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.05 -0.04 -0.06 0.05 -0.05 0.08 -0.01 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1194

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 474

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 105

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages