Detailed information of deep learning profile BP000221.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in LNCAP using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000221.1
Cell line/tissue: LNCAP
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR315NAC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.16 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4872 4432 4317 5857 7125 5391 4218 4979 4236 4602 5234 5271 5444 5518 4935 3410 4835 5832 2300 588 13272 1758 3587 16473 356 7761 1704 409 579 3264 8221 2163 3127 7260 3813 6124 4631 5503 4884 4666 5455 6650 4575 5483 5757 5923 5651 5660 5520 5475 ]
C [ 4740 3765 5116 5983 4387 4144 3656 4976 7761 6826 6086 5645 5299 4850 5413 6538 4461 2573 15169 19735 1341 10524 7580 623 118 176 826 142 754 14885 1242 10766 6598 5111 4227 3890 3953 5354 6310 7290 6314 4387 5391 4822 4604 4815 4744 4956 5171 5091 ]
G [ 5122 6761 6512 3980 4766 4713 4568 4654 3463 3836 4495 4787 4586 4254 4905 3313 6482 8374 1725 306 2757 7795 1931 2221 20201 12718 10768 19965 17788 715 10106 5609 1987 5872 5113 4270 8256 5371 5373 3515 3586 5235 5598 5439 5374 4664 4766 5459 5330 5276 ]
T [ 6168 5944 4957 5082 4624 6654 8460 6293 5442 5638 5087 5199 5573 6280 5649 7641 5124 4123 1708 273 3532 825 7804 1585 227 247 7604 386 1781 2038 1333 2364 9190 2659 7749 6618 4062 4674 4335 5431 5547 4630 5338 5158 5167 5500 5741 4827 4881 5060 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.01 0.08 -0.05 0.05 -0.06 -0.04 -0.05 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.02 0.04 0.04 -0.01 0.11 0.17 -0.01 0.11 0.05 -0.01 -0.02 -0.06 -0.00 -0.04 -0.03 0.12 -0.02 0.06 0.04 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.01 0.01 0.01 0.00 0.04 0.05 -0.02 -0.02 0.06 0.05 -0.01 0.02 0.17 0.11 0.10 0.15 0.12 -0.02 0.12 0.04 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.01 0.01 0.02 -0.01 -0.01 -0.03 -0.06 -0.03 -0.06 0.05 -0.03 -0.04 -0.07 0.03 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1194

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 474

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 105

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages