Detailed information of deep learning profile BP000216.1

  1. Home
  2. Deep Learning Profile > BP000216.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in osteocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000216.1
Cell line/tissue: osteocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR300DWM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.07 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.08 0.06 0.17 0.11 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5263 4753 4544 6135 7614 5721 4574 5254 4512 4894 5520 5756 5661 5692 4990 3556 5147 6186 2532 1193 13519 2046 3767 17935 392 7424 2232 485 1050 4344 8268 2689 3819 7630 4156 6419 4836 5847 5223 5175 5922 6662 5084 5679 6003 6105 5960 5830 5874 5782 ]
C [ 5460 4469 5931 6793 5016 4862 4274 5676 8807 7670 7027 6215 5983 5570 6464 7796 5261 2956 16824 20959 1603 11465 8761 623 101 263 948 268 1712 14743 2053 10836 7208 5232 4929 4694 4566 5983 6966 7879 6781 5132 5974 5542 5421 5453 5529 5605 5769 5641 ]
G [ 5754 7475 7195 4571 5386 5398 5194 5331 3966 4493 5103 5466 5268 4791 5588 3624 7009 9428 1924 420 3609 8426 2160 2584 22200 14838 13179 21673 18239 1495 10811 6440 2916 6840 6090 5126 9059 6085 6090 4187 4509 6097 6197 6155 5979 5412 5461 6132 6194 5932 ]
T [ 6429 6209 5236 5407 4890 6925 8864 6645 5621 5849 5256 5469 5994 6853 5864 7930 5489 4336 1626 334 4175 969 8218 1764 213 381 6547 480 1905 2324 1774 2941 8963 3204 7731 6667 4445 4991 4627 5665 5694 5015 5651 5530 5503 5936 5956 5339 5069 5551 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.03 -0.02 0.09 -0.05 0.05 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.06 0.04 -0.00 0.12 0.19 -0.01 0.13 0.06 0.00 -0.02 -0.06 0.01 -0.03 -0.01 0.13 -0.01 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 0.00 0.04 0.06 -0.02 -0.03 0.07 0.06 -0.01 0.03 0.18 0.13 0.11 0.18 0.13 -0.01 0.13 0.05 -0.00 0.03 0.02 0.01 0.04 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.04 -0.08 -0.03 -0.05 0.05 -0.04 -0.03 -0.08 0.02 -0.04 0.00 -0.03 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1040

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 182

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages