Detailed information of deep learning profile BP000216.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in osteocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000216.1
Cell line/tissue: osteocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR300DWM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.11 0.17 0.06 0.08 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.07 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5551 5069 5339 5956 5936 5503 5530 5651 5015 5694 5665 4627 4991 4445 6667 7731 3204 8963 2941 1774 2324 1905 480 6547 381 213 1764 8218 969 4175 334 1626 4336 5489 7930 5864 6853 5994 5469 5256 5849 5621 6645 8864 6925 4890 5407 5236 6209 6429 ]
C [ 5932 6194 6132 5461 5412 5979 6155 6197 6097 4509 4187 6090 6085 9059 5126 6090 6840 2916 6440 10811 1495 18239 21673 13179 14838 22200 2584 2160 8426 3609 420 1924 9428 7009 3624 5588 4791 5268 5466 5103 4493 3966 5331 5194 5398 5386 4571 7195 7475 5754 ]
G [ 5641 5769 5605 5529 5453 5421 5542 5974 5132 6781 7879 6966 5983 4566 4694 4929 5232 7208 10836 2053 14743 1712 268 948 263 101 623 8761 11465 1603 20959 16824 2956 5261 7796 6464 5570 5983 6215 7027 7670 8807 5676 4274 4862 5016 6793 5931 4469 5460 ]
T [ 5782 5874 5830 5960 6105 6003 5679 5084 6662 5922 5175 5223 5847 4836 6419 4156 7630 3819 2689 8268 4344 1050 485 2232 7424 392 17935 3767 2046 13519 1193 2532 6186 5147 3556 4990 5692 5661 5756 5520 4894 4512 5254 4574 5721 7614 6135 4544 4753 5263 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.03 0.00 -0.04 0.02 -0.08 -0.03 -0.04 0.05 -0.05 -0.03 -0.08 -0.04 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.00 0.05 0.13 -0.01 0.13 0.18 0.11 0.13 0.18 0.03 -0.01 0.06 0.07 -0.03 -0.02 0.06 0.04 0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.01 0.13 -0.01 -0.03 0.01 -0.06 -0.02 0.00 0.06 0.13 -0.01 0.19 0.12 -0.00 0.04 0.06 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.05 -0.05 0.09 -0.02 -0.03 0.03 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1040

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 182

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages