Detailed information of deep learning profile BP000214.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000214.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR296JFK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.17 -0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.08 0.05 0.17 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4111 5279 6552 4989 4033 4568 3987 4268 4907 5013 4997 5091 4588 3290 4704 5371 2440 1491 11472 1923 3435 15628 436 6885 1943 529 794 3811 7449 2075 3237 6738 3512 5606 4326 5008 4464 4434 5064 5925 4387 5073 5187 5469 5286 5195 5105 5143 5123 5074 ]
C [ 5441 6270 4658 4574 4158 5240 7752 6965 6185 5679 5504 5187 5721 6954 4611 2817 14657 18313 1599 10137 7904 764 143 276 1090 223 1429 13644 1641 10002 6628 5057 4581 4295 4120 5521 6572 7423 6230 4661 5624 5072 5006 5045 4996 5249 5291 5333 5240 5388 ]
G [ 6520 4412 5113 5210 5023 5069 3921 4281 4829 5186 5073 4556 5165 3619 6452 8755 1971 483 3924 7698 2309 2506 19830 13168 11688 19452 16664 1265 10130 6073 2616 6222 5498 4748 8386 5773 5502 3787 4144 5715 5785 5755 5719 5087 5233 5664 5728 5504 5474 5508 ]
T [ 4575 4686 4324 5874 7433 5770 4987 5133 4726 4769 5073 5813 5173 6784 4880 3704 1579 360 3652 889 6999 1749 238 318 5926 443 1760 1927 1427 2497 8166 2630 7056 5998 3815 4345 4109 5003 5209 4346 4851 4747 4735 5046 5132 4539 4523 4667 4810 4677 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.02 -0.01 0.02 -0.00 -0.02 0.04 -0.02 -0.01 0.09 -0.05 0.05 -0.06 -0.04 -0.05 -0.01 0.03 -0.02 -0.01 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.05 0.03 -0.01 0.11 0.18 -0.02 0.11 0.05 -0.01 -0.03 -0.06 0.01 -0.04 -0.02 0.13 -0.02 0.07 0.05 0.04 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.00 0.04 0.06 -0.03 -0.03 0.08 0.05 -0.02 0.03 0.18 0.13 0.10 0.17 0.13 -0.02 0.14 0.05 -0.01 0.03 0.03 0.00 0.04 0.02 ]
T [ 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.08 -0.02 -0.05 0.06 -0.02 -0.03 -0.07 0.03 -0.03 0.01 -0.02 -0.06 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 20

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages