Detailed information of deep learning profile BP000214.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000214.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR296JFK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.17 0.05 0.08 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 -0.00 0.17 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4677 4810 4667 4523 4539 5132 5046 4735 4747 4851 4346 5209 5003 4109 4345 3815 5998 7056 2630 8166 2497 1427 1927 1760 443 5926 318 238 1749 6999 889 3652 360 1579 3704 4880 6784 5173 5813 5073 4769 4726 5133 4987 5770 7433 5874 4324 4686 4575 ]
C [ 5508 5474 5504 5728 5664 5233 5087 5719 5755 5785 5715 4144 3787 5502 5773 8386 4748 5498 6222 2616 6073 10130 1265 16664 19452 11688 13168 19830 2506 2309 7698 3924 483 1971 8755 6452 3619 5165 4556 5073 5186 4829 4281 3921 5069 5023 5210 5113 4412 6520 ]
G [ 5388 5240 5333 5291 5249 4996 5045 5006 5072 5624 4661 6230 7423 6572 5521 4120 4295 4581 5057 6628 10002 1641 13644 1429 223 1090 276 143 764 7904 10137 1599 18313 14657 2817 4611 6954 5721 5187 5504 5679 6185 6965 7752 5240 4158 4574 4658 6270 5441 ]
T [ 5074 5123 5143 5105 5195 5286 5469 5187 5073 4387 5925 5064 4434 4464 5008 4326 5606 3512 6738 3237 2075 7449 3811 794 529 1943 6885 436 15628 3435 1923 11472 1491 2440 5371 4704 3290 4588 5091 4997 5013 4907 4268 3987 4568 4033 4989 6552 5279 4111 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.04 -0.01 -0.06 -0.02 0.01 -0.03 0.03 -0.07 -0.03 -0.02 0.06 -0.05 -0.02 -0.08 -0.03 -0.02 -0.00 0.02 0.01 0.01 ]
C [ 0.02 0.04 0.00 0.03 0.03 -0.01 0.05 0.14 -0.02 0.13 0.17 0.10 0.13 0.18 0.03 -0.02 0.05 0.08 -0.03 -0.03 0.06 0.04 0.00 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.04 0.05 0.07 -0.02 0.13 -0.02 -0.04 0.01 -0.06 -0.03 -0.01 0.05 0.11 -0.02 0.18 0.11 -0.01 0.03 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.01 -0.02 0.03 -0.01 -0.05 -0.04 -0.06 0.05 -0.05 0.09 -0.01 -0.02 0.04 -0.02 -0.00 0.02 -0.01 -0.02 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 20

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages