Detailed information of deep learning profile BP000212.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000212.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR288YJL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.05 -0.00 -0.01 0.16 0.00 0.02 0.00 0.00 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.18 0.28 0.00 0.08 0.03 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.02 0.02 0.00 0.00 0.01 0.01 0.00 0.00 0.29 0.12 0.12 0.24 0.17 ]
T [ 0.00 0.03 -0.00 -0.00 -0.00 0.00 -0.01 -0.01 0.03 -0.00 0.00 0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 9 7 7 7 7 7 12 7 10 7 9 9 5 7 11 5 6 6 8 3 3 6 4 10 9 7 8 10 3 6 6 13 12 8 6 1 2 0 10 1 1 25 1 8 36 0 12 0 0 1 ]
C [ 11 7 11 6 4 6 9 10 5 9 6 10 11 7 7 7 6 5 1 3 5 3 5 1 2 3 2 3 3 0 3 6 4 3 7 14 10 7 3 35 36 0 20 20 0 0 0 0 0 2 ]
G [ 12 16 12 16 18 17 11 15 16 14 17 9 20 14 16 19 16 19 23 20 23 24 21 24 26 25 24 19 21 28 26 14 18 16 10 12 3 23 19 0 0 7 14 0 0 37 25 32 37 34 ]
T [ 5 7 7 8 8 7 5 5 6 7 5 9 1 9 3 6 9 7 5 11 6 4 7 2 0 2 3 5 10 3 2 4 3 10 14 10 22 7 5 1 0 5 2 9 1 0 0 5 0 0 ]

Hypothetical CWM

   
A [ 0.01 0.01 0.01 -0.00 -0.04 -0.03 0.04 -0.02 -0.05 0.07 -0.04 -0.03 0.17 -0.14 0.07 -0.11 -0.11 -0.09 ]
C [ 0.02 0.01 -0.00 0.02 0.07 0.04 -0.03 0.19 0.28 -0.07 0.16 0.06 -0.06 -0.08 -0.15 -0.03 -0.10 -0.08 ]
G [ -0.01 -0.00 -0.00 0.01 -0.03 0.04 0.05 -0.09 -0.09 0.08 0.05 -0.08 0.01 0.29 0.20 0.14 0.24 0.17 ]
T [ 0.00 0.01 0.02 0.01 0.04 -0.01 -0.02 -0.06 -0.15 -0.04 -0.13 0.12 -0.07 -0.08 -0.11 0.03 -0.08 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 17028

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1011

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 369

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 276

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 155

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 42

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 24

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages