Detailed information of deep learning profile BP000211.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000211.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR287UXS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.00 0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.01 -0.00 0.02 0.05 -0.00 0.10 0.18 0.06 0.06 0.19 0.00 0.00 0.01 0.00 0.00 -0.00 0.02 0.02 -0.00 0.00 ]
G [ 0.00 0.01 0.04 0.00 0.09 0.00 0.01 -0.00 0.00 0.00 -0.00 0.02 0.07 -0.00 0.19 0.12 0.00 0.00 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.07 -0.01 -0.00 0.04 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 25 111 21 14 34 22 5 83 10 4 15 78 11 21 5 12 36 43 120 67 81 65 55 42 56 43 59 95 142 36 50 58 4 169 45 38 50 58 54 57 51 57 60 40 61 53 61 41 67 65 ]
C [ 75 10 72 80 16 152 188 109 96 184 30 13 68 19 2 8 95 91 21 42 29 40 42 73 49 26 30 41 12 67 8 4 194 10 23 69 56 41 55 48 50 65 42 48 49 44 39 57 42 42 ]
G [ 29 61 89 19 125 21 7 4 4 10 3 75 112 8 185 171 25 25 43 52 46 50 61 47 54 100 79 18 40 28 23 132 5 7 104 46 38 55 45 36 50 35 50 46 42 40 48 51 48 52 ]
T [ 79 26 26 95 33 13 8 12 98 10 160 42 17 160 16 17 52 49 24 47 52 53 50 46 49 39 40 54 14 77 127 14 5 22 36 55 64 54 54 67 57 51 56 74 56 71 60 59 51 49 ]

Hypothetical CWM

   
A [ -0.05 0.03 -0.01 -0.07 -0.03 0.01 -0.04 0.03 -0.07 -0.04 -0.04 0.06 -0.05 -0.02 -0.07 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.04 -0.01 0.05 0.14 -0.01 0.14 0.19 0.13 0.14 0.20 0.04 -0.01 0.06 0.08 -0.02 -0.03 0.06 0.05 0.00 0.02 0.01 0.02 0.00 ]
G [ 0.04 0.05 0.08 -0.01 0.14 -0.02 -0.03 -0.00 -0.05 -0.02 -0.00 0.06 0.14 -0.02 0.20 0.13 -0.00 0.04 0.06 0.02 0.01 0.01 0.02 ]
T [ 0.03 -0.02 -0.03 0.02 -0.02 -0.05 -0.04 -0.07 0.05 -0.05 0.09 -0.01 -0.03 0.05 -0.04 -0.01 0.03 -0.02 -0.03 -0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 17799

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1430

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 107

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 104

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 27

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages