Detailed information of deep learning profile BP000210.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000210.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR275JVX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.13 0.18 0.06 0.08 0.20 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.11 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4824 4656 4842 5653 5400 5084 4989 5094 4520 5455 5302 4221 4488 3888 6330 7537 2510 8878 2394 1294 1878 1758 337 6775 257 222 1630 7971 798 3202 303 1660 3887 4997 7522 5575 6110 5285 5040 4822 5536 5257 6146 8296 6402 4519 4945 4849 5809 5986 ]
C [ 5635 5673 5741 4900 4796 5568 5786 5705 5574 3711 3506 5388 5656 8557 4658 5275 6184 2389 5980 10331 954 17449 20105 11749 12863 20272 2231 1903 7534 3562 362 1776 8887 6652 3485 5246 4504 4999 5094 4822 4066 3719 5004 4862 5050 4989 4229 6697 6870 5339 ]
G [ 5278 5274 5081 4940 4833 4928 4917 5732 4508 6485 7697 6758 5556 3980 4106 4557 5138 6668 10644 1326 14751 1172 157 973 209 122 648 7674 11016 1378 19371 15324 2661 4687 6873 5519 5010 5508 5735 6266 7012 7970 5188 3797 4317 4552 6375 5352 4115 5013 ]
T [ 5298 5432 5371 5542 6006 5455 5343 4504 6433 5384 4530 4668 5335 4610 5941 3666 7203 3100 2017 8084 3452 656 436 1538 7706 419 16526 3487 1687 12893 999 2275 5600 4699 3155 4695 5411 5243 5166 5125 4421 4089 4697 4080 5266 6975 5486 4137 4241 4697 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.08 -0.04 0.01 -0.04 0.03 -0.09 -0.05 -0.05 0.07 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.05 0.00 0.02 0.04 -0.01 0.05 0.15 -0.03 0.15 0.19 0.11 0.14 0.20 0.03 -0.02 0.06 0.09 -0.03 -0.02 0.07 0.05 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.03 0.01 0.01 0.02 0.04 0.05 0.08 -0.02 0.16 -0.04 -0.04 0.00 -0.07 -0.04 -0.01 0.06 0.13 -0.03 0.20 0.13 -0.01 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.03 0.03 -0.03 -0.03 0.03 -0.02 -0.06 -0.06 -0.07 0.06 -0.06 0.10 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1075

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 399

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 390

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 197

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 103

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages