Detailed information of deep learning profile BP000210.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000210.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR275JVX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.07 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.11 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.20 0.08 0.06 0.18 0.13 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4697 4241 4137 5486 6975 5266 4080 4697 4089 4421 5125 5166 5243 5411 4695 3155 4699 5600 2275 999 12893 1687 3487 16526 419 7706 1538 436 656 3452 8084 2017 3100 7203 3666 5941 4610 5335 4668 4530 5384 6433 4504 5343 5455 6006 5542 5371 5432 5298 ]
C [ 5013 4115 5352 6375 4552 4317 3797 5188 7970 7012 6266 5735 5508 5010 5519 6873 4687 2661 15324 19371 1378 11016 7674 648 122 209 973 157 1172 14751 1326 10644 6668 5138 4557 4106 3980 5556 6758 7697 6485 4508 5732 4917 4928 4833 4940 5081 5274 5278 ]
G [ 5339 6870 6697 4229 4989 5050 4862 5004 3719 4066 4822 5094 4999 4504 5246 3485 6652 8887 1776 362 3562 7534 1903 2231 20272 12863 11749 20105 17449 954 10331 5980 2389 6184 5275 4658 8557 5656 5388 3506 3711 5574 5705 5786 5568 4796 4900 5741 5673 5635 ]
T [ 5986 5809 4849 4945 4519 6402 8296 6146 5257 5536 4822 5040 5285 6110 5575 7522 4997 3887 1660 303 3202 798 7971 1630 222 257 6775 337 1758 1878 1294 2394 8878 2510 7537 6330 3888 4488 4221 5302 5455 4520 5094 4989 5084 5400 5653 4842 4656 4824 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.10 -0.06 0.06 -0.07 -0.06 -0.06 -0.02 0.03 -0.03 -0.03 0.03 -0.03 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.01 0.13 0.20 -0.03 0.13 0.06 -0.01 -0.04 -0.07 0.00 -0.04 -0.04 0.16 -0.02 0.08 0.05 0.04 0.02 0.01 0.01 0.03 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.05 0.07 -0.02 -0.03 0.09 0.06 -0.02 0.03 0.20 0.14 0.11 0.19 0.15 -0.03 0.15 0.05 -0.01 0.04 0.02 0.00 0.05 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.07 -0.05 -0.05 -0.09 0.03 -0.04 0.01 -0.04 -0.08 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1075

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 399

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 390

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 197

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 103

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages