Detailed information of deep learning profile BP000209.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000209.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR270KFY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.19 -0.00 0.07 0.02 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.11 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.19 0.07 0.06 0.18 0.13 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5018 4531 4391 5871 7272 5451 4396 5098 4484 4737 5389 5533 5663 5866 5064 3416 5039 6012 2497 880 14061 1817 3754 17444 427 8593 1532 393 631 3370 9177 2103 3224 7849 3853 6325 4953 5575 5011 4830 5742 6916 4724 5604 5873 6267 5844 5725 5698 5787 ]
C [ 5164 4264 5588 6559 4687 4456 3949 5452 8198 7374 6483 5981 5732 5103 5704 7099 4666 2814 16083 20683 1331 11510 7915 607 90 146 839 108 1011 15910 1252 10828 7261 5203 4645 4212 3948 5803 7147 8163 6855 4499 5952 5179 5152 4956 5153 5256 5597 5462 ]
G [ 5542 7210 6948 4368 5279 5304 4972 5109 3830 4244 4995 5355 5151 4649 5512 3551 7156 9218 1781 295 3308 7883 1914 2296 21364 13113 12342 21309 18559 886 10336 6640 2368 6418 5593 4813 9072 5898 5460 3468 3753 5925 5999 6026 5745 5039 5013 5968 5872 5730 ]
T [ 6380 6099 5177 5306 4866 6893 8787 6445 5592 5749 5237 5235 5558 6486 5824 8038 5243 4060 1743 246 3404 894 8521 1757 223 252 7391 294 1903 1938 1339 2533 9251 2634 8013 6754 4131 4828 4486 5643 5754 4764 5429 5295 5334 5842 6094 5155 4937 5125 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.05 0.06 -0.08 -0.05 -0.06 -0.02 0.03 -0.03 -0.02 0.03 -0.02 0.01 -0.01 0.00 0.00 ]
C [ 0.03 0.02 0.02 0.03 0.06 0.04 -0.00 0.13 0.20 -0.02 0.13 0.07 0.01 -0.02 -0.05 0.02 -0.03 -0.02 0.16 -0.01 0.08 0.06 0.04 0.02 0.02 0.01 0.03 0.03 ]
G [ 0.02 0.02 0.02 0.03 0.01 0.05 0.07 -0.02 -0.02 0.10 0.07 -0.01 0.04 0.20 0.14 0.12 0.19 0.15 -0.02 0.16 0.06 -0.00 0.04 0.03 0.00 0.05 0.02 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.08 -0.03 -0.06 0.06 -0.04 -0.04 -0.08 0.03 -0.04 0.01 -0.03 -0.07 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2764

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 509

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 500

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 349

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 301

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages