Detailed information of deep learning profile BP000209.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000209.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR270KFY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.13 0.18 0.06 0.07 0.19 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.11 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.19 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5125 4937 5155 6094 5842 5334 5295 5429 4764 5754 5643 4486 4828 4131 6754 8013 2634 9251 2533 1339 1938 1903 294 7391 252 223 1757 8521 894 3404 246 1743 4060 5243 8038 5824 6486 5558 5235 5237 5749 5592 6445 8787 6893 4866 5306 5177 6099 6380 ]
C [ 5730 5872 5968 5013 5039 5745 6026 5999 5925 3753 3468 5460 5898 9072 4813 5593 6418 2368 6640 10336 886 18559 21309 12342 13113 21364 2296 1914 7883 3308 295 1781 9218 7156 3551 5512 4649 5151 5355 4995 4244 3830 5109 4972 5304 5279 4368 6948 7210 5542 ]
G [ 5462 5597 5256 5153 4956 5152 5179 5952 4499 6855 8163 7147 5803 3948 4212 4645 5203 7261 10828 1252 15910 1011 108 839 146 90 607 7915 11510 1331 20683 16083 2814 4666 7099 5704 5103 5732 5981 6483 7374 8198 5452 3949 4456 4687 6559 5588 4264 5164 ]
T [ 5787 5698 5725 5844 6267 5873 5604 4724 6916 5742 4830 5011 5575 4953 6325 3853 7849 3224 2103 9177 3370 631 393 1532 8593 427 17444 3754 1817 14061 880 2497 6012 5039 3416 5064 5866 5663 5533 5389 4737 4484 5098 4396 5451 7272 5871 4391 4531 5018 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.01 0.03 -0.04 0.04 -0.01 -0.07 -0.03 0.01 -0.04 0.03 -0.08 -0.04 -0.04 0.06 -0.06 -0.03 -0.08 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.02 0.05 0.00 0.03 0.04 -0.00 0.06 0.16 -0.02 0.15 0.19 0.12 0.14 0.20 0.04 -0.01 0.07 0.10 -0.02 -0.02 0.07 0.05 0.01 0.03 0.02 0.02 0.02 ]
G [ 0.03 0.03 0.01 0.02 0.02 0.04 0.06 0.08 -0.01 0.16 -0.02 -0.03 0.02 -0.05 -0.02 0.01 0.07 0.13 -0.02 0.20 0.13 -0.00 0.04 0.06 0.03 0.02 0.02 0.03 ]
T [ 0.00 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.03 0.03 -0.02 -0.06 -0.05 -0.08 0.06 -0.05 0.09 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.01 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2764

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 509

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 500

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 349

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 301

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages