Detailed information of deep learning profile BP000208.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in nephron using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000208.1
Cell line/tissue: nephron
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR266ZUX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.06 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4473 4034 3742 5335 7098 5018 3740 4547 3796 4186 4759 4944 5039 5154 4431 2987 4384 5446 1919 524 12759 1359 3116 15963 289 7208 1516 422 804 3735 7246 2271 3276 6563 3707 5664 4392 5088 4587 4400 5134 6097 4436 5029 5312 5510 5265 5171 5170 5094 ]
C [ 4677 3482 4820 6102 3993 3841 3248 4799 7942 6857 6015 5486 5109 4544 5091 6541 4341 2257 15048 18799 1120 10652 7609 568 98 263 832 239 1556 12793 1887 9517 5977 4615 4066 3747 3760 5144 5983 6871 5822 4247 5147 4607 4431 4574 4614 4653 4927 4828 ]
G [ 4834 6432 6638 3631 4440 4603 4118 4394 3046 3456 4308 4539 4350 4019 4788 2959 6190 8299 1446 224 2725 7015 1529 1912 19160 11942 11198 18712 15584 1214 9098 5381 2406 5831 5088 4467 7765 5181 5037 3314 3589 5066 5174 5261 4970 4459 4564 5240 5148 5121 ]
T [ 5742 5778 4526 4658 4195 6264 8620 5986 4942 5227 4644 4757 5228 6009 5416 7239 4811 3724 1313 179 3122 700 7472 1283 179 313 6180 353 1782 1984 1495 2557 8067 2717 6865 5848 3809 4313 4119 5141 5181 4316 4969 4829 5013 5183 5283 4662 4481 4683 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.03 0.09 -0.06 0.04 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.00 -0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.04 -0.01 0.11 0.17 -0.02 0.11 0.05 -0.01 -0.02 -0.06 -0.00 -0.04 -0.03 0.11 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 0.01 0.04 0.06 -0.02 -0.02 0.07 0.05 -0.02 0.02 0.17 0.12 0.09 0.16 0.12 -0.02 0.11 0.04 -0.00 0.03 0.02 0.01 0.04 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.05 -0.05 -0.05 -0.07 0.02 -0.04 -0.00 -0.03 -0.06 -0.01 0.02 -0.04 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 528

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 224

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages