Detailed information of deep learning profile BP000208.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in nephron using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000208.1
Cell line/tissue: nephron
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR266ZUX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.06 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4683 4481 4662 5283 5183 5013 4829 4969 4316 5181 5141 4119 4313 3809 5848 6865 2717 8067 2557 1495 1984 1782 353 6180 313 179 1283 7472 700 3122 179 1313 3724 4811 7239 5416 6009 5228 4757 4644 5227 4942 5986 8620 6264 4195 4658 4526 5778 5742 ]
C [ 5121 5148 5240 4564 4459 4970 5261 5174 5066 3589 3314 5037 5181 7765 4467 5088 5831 2406 5381 9098 1214 15584 18712 11198 11942 19160 1912 1529 7015 2725 224 1446 8299 6190 2959 4788 4019 4350 4539 4308 3456 3046 4394 4118 4603 4440 3631 6638 6432 4834 ]
G [ 4828 4927 4653 4614 4574 4431 4607 5147 4247 5822 6871 5983 5144 3760 3747 4066 4615 5977 9517 1887 12793 1556 239 832 263 98 568 7609 10652 1120 18799 15048 2257 4341 6541 5091 4544 5109 5486 6015 6857 7942 4799 3248 3841 3993 6102 4820 3482 4677 ]
T [ 5094 5170 5171 5265 5510 5312 5029 4436 6097 5134 4400 4587 5088 4392 5664 3707 6563 3276 2271 7246 3735 804 422 1516 7208 289 15963 3116 1359 12759 524 1919 5446 4384 2987 4431 5154 5039 4944 4759 4186 3796 4547 3740 5018 7098 5335 3742 4034 4473 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.04 0.02 -0.01 -0.06 -0.03 -0.00 -0.04 0.02 -0.07 -0.05 -0.05 0.05 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.00 0.04 0.11 -0.02 0.12 0.16 0.09 0.12 0.17 0.02 -0.02 0.05 0.07 -0.02 -0.02 0.06 0.04 0.01 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.11 -0.03 -0.04 -0.00 -0.06 -0.02 -0.01 0.05 0.11 -0.02 0.17 0.11 -0.01 0.04 0.05 0.02 0.01 0.01 0.02 ]
T [ -0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.04 -0.06 0.09 -0.03 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 528

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 224

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages