Detailed information of deep learning profile BP000199.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000199.1
Cell line/tissue: liver
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR254YRM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.15 0.06 0.04 0.13 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3638 4928 6219 4492 3515 4184 3483 3882 4420 4500 4615 4683 4171 2871 4141 5058 1909 525 11800 1347 2886 14396 256 7068 1368 300 405 2851 7437 1918 2673 6372 3353 5275 4012 4651 4170 3986 4736 5800 3894 4730 4857 5130 4801 4719 4714 4713 4750 4495 ]
C [ 4375 5277 3744 3535 3106 4293 6848 5835 5277 4840 4635 4213 4572 5599 3699 2089 13274 17006 946 9168 6743 470 86 192 696 68 533 12630 1090 8673 5641 4200 3559 3292 3173 4581 5653 6396 5392 3670 4681 4049 3961 4014 4062 4206 4367 4299 4315 4512 ]
G [ 5638 3422 4057 4090 3837 3993 2883 3291 3941 4109 3882 3601 4229 2814 5604 7167 1328 186 2266 6676 1516 1767 17391 10399 9193 17256 15399 627 8138 5167 1872 5077 4607 3728 7254 4682 4358 2789 3031 4531 4730 4692 4569 4001 4005 4733 4631 4576 4432 4573 ]
T [ 4217 4241 3848 5751 7410 5398 4654 4860 4230 4419 4736 5371 4896 6584 4424 3554 1357 151 2856 677 6723 1235 135 209 6611 244 1531 1760 1203 2110 7682 2219 6349 5573 3429 3954 3687 4697 4709 3867 4563 4397 4481 4723 5000 4210 4156 4280 4371 4288 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.00 -0.02 0.03 -0.02 -0.02 0.08 -0.04 0.05 -0.05 -0.05 -0.04 -0.01 0.02 -0.01 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.02 0.04 0.03 -0.01 0.10 0.16 -0.02 0.10 0.04 -0.01 -0.02 -0.07 -0.00 -0.03 -0.03 0.10 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 -0.00 0.04 0.05 -0.02 -0.02 0.06 0.05 -0.01 0.02 0.15 0.11 0.09 0.14 0.11 -0.01 0.10 0.04 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.01 0.01 0.02 -0.01 -0.01 -0.04 -0.07 -0.03 -0.05 0.05 -0.03 -0.04 -0.07 0.02 -0.03 0.01 -0.02 -0.05 -0.01 0.02 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3400

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 284

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages