Detailed information of deep learning profile BP000197.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in lower leg skin using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000197.1
Cell line/tissue: lower leg skin
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR252XWG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.04 0.08 -0.00 0.02 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.04 -0.00 0.01 0.00 0.00 -0.00 ]
G [ -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.07 0.03 0.02 0.07 0.04 -0.00 0.03 0.00 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 1936 1559 1377 2666 3818 2463 1498 2146 1411 1725 2320 2515 2623 2680 2360 1132 1849 2694 827 113 7450 384 1426 9035 87 3995 362 117 339 1133 4050 896 1215 3702 1571 3213 2060 2270 2270 1840 2576 3556 1774 2498 2603 3162 2561 2266 2551 2475 ]
C [ 2838 1742 2837 3931 2223 1893 1530 2571 5201 4275 3827 3485 2988 2346 2523 3495 2053 959 8616 10232 301 6609 4840 328 61 67 423 47 352 8251 373 5444 4022 2721 2350 2203 1767 3371 4110 5011 3965 1924 3340 2613 2641 2368 2490 2733 2821 2947 ]
G [ 2764 4125 4248 1647 2647 2648 2352 2499 1464 1786 2355 2418 2387 2236 2924 1359 4427 5213 514 38 1793 3222 798 689 10244 6309 5922 10161 9005 299 5675 3382 1224 3173 3185 2299 4927 2968 2246 1308 1415 3201 3024 3026 2745 2253 2478 3361 3090 2923 ]
T [ 2885 2997 1961 2179 1735 3419 5043 3207 2347 2637 1921 2005 2425 3161 2616 4437 2094 1557 466 40 879 208 3359 371 31 52 3716 98 727 740 325 701 3962 827 3317 2708 1669 1814 1797 2264 2467 1742 2285 2286 2434 2640 2894 2063 1961 2078 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 0.00 -0.01 -0.01 0.02 -0.00 -0.01 0.03 -0.00 -0.00 0.05 -0.03 0.03 -0.03 -0.01 -0.01 -0.00 0.02 -0.00 -0.01 0.02 -0.01 0.01 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.01 0.03 0.02 -0.01 0.05 0.08 -0.03 0.04 0.02 -0.00 -0.00 -0.03 0.00 -0.03 -0.02 0.05 -0.01 0.03 0.02 0.01 0.00 0.00 -0.00 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.02 0.03 -0.02 -0.02 0.04 0.02 -0.01 0.01 0.07 0.05 0.04 0.07 0.05 -0.02 0.05 0.02 -0.00 0.01 0.01 -0.00 0.02 0.01 ]
T [ 0.00 0.01 0.01 0.01 0.01 0.01 -0.00 -0.00 -0.03 -0.01 -0.03 0.03 -0.02 -0.01 -0.04 0.02 -0.01 0.01 -0.01 -0.03 -0.01 0.02 -0.02 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 164

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 162

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages