Detailed information of deep learning profile BP000197.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in lower leg skin using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000197.1
Cell line/tissue: lower leg skin
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR252XWG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.03 -0.00 0.04 0.07 0.02 0.03 0.07 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 0.01 -0.00 -0.00 ]
G [ -0.00 0.00 0.00 0.01 -0.00 0.04 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.02 -0.00 0.08 0.04 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2078 1961 2063 2894 2640 2434 2286 2285 1742 2467 2264 1797 1814 1669 2708 3317 827 3962 701 325 740 727 98 3716 52 31 371 3359 208 879 40 466 1557 2094 4437 2616 3161 2425 2005 1921 2637 2347 3207 5043 3419 1735 2179 1961 2997 2885 ]
C [ 2923 3090 3361 2478 2253 2745 3026 3024 3201 1415 1308 2246 2968 4927 2299 3185 3173 1224 3382 5675 299 9005 10161 5922 6309 10244 689 798 3222 1793 38 514 5213 4427 1359 2924 2236 2387 2418 2355 1786 1464 2499 2352 2648 2647 1647 4248 4125 2764 ]
G [ 2947 2821 2733 2490 2368 2641 2613 3340 1924 3965 5011 4110 3371 1767 2203 2350 2721 4022 5444 373 8251 352 47 423 67 61 328 4840 6609 301 10232 8616 959 2053 3495 2523 2346 2988 3485 3827 4275 5201 2571 1530 1893 2223 3931 2837 1742 2838 ]
T [ 2475 2551 2266 2561 3162 2603 2498 1774 3556 2576 1840 2270 2270 2060 3213 1571 3702 1215 896 4050 1133 339 117 362 3995 87 9035 1426 384 7450 113 827 2694 1849 1132 2360 2680 2623 2515 2320 1725 1411 2146 1498 2463 3818 2666 1377 1559 1936 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.02 0.02 -0.01 -0.03 -0.01 0.01 -0.01 0.02 -0.04 -0.01 -0.02 0.03 -0.03 -0.01 -0.03 -0.00 -0.00 0.01 0.01 0.01 0.01 0.01 0.00 ]
C [ 0.01 0.02 -0.00 0.01 0.01 -0.00 0.02 0.05 -0.02 0.05 0.07 0.04 0.05 0.07 0.01 -0.01 0.02 0.04 -0.02 -0.02 0.03 0.02 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.01 -0.00 0.00 0.00 0.01 0.02 0.03 -0.01 0.05 -0.02 -0.03 0.00 -0.03 -0.00 -0.00 0.02 0.04 -0.03 0.08 0.05 -0.01 0.02 0.03 0.01 0.01 0.01 0.01 ]
T [ 0.00 0.00 0.01 -0.01 0.02 -0.01 -0.00 0.02 -0.00 -0.01 -0.01 -0.03 0.03 -0.03 0.05 -0.00 -0.00 0.03 -0.01 -0.00 0.02 -0.01 -0.01 0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 164

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 162

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
BP000082.1 CTCF ENCSR000DTR epithelial cell of esophagus Homo sapiens MA0139.2
BP000083.1 CTCF ENCSR000DTW HEK293 Homo sapiens MA0139.2
BP000084.1 CTCF ENCSR000DUB HeLa-S3 Homo sapiens MA0139.2
BP000085.1 CTCF ENCSR000DUG HepG2 Homo sapiens MA0139.2
BP000086.1 CTCF ENCSR000DUH foreskin fibroblast Homo sapiens MA0139.2
BP000087.1 CTCF ENCSR000DUM HFF-Myc Homo sapiens MA0139.2
BP000088.1 CTCF ENCSR000DUP HL-60 Homo sapiens MA0139.2
BP000089.1 CTCF ENCSR000DUS mammary epithelial cell Homo sapiens MA0139.2
BP000090.1 CTCF ENCSR000DUU fibroblast of mammary gland Homo sapiens MA0139.2
Showing 10 profiles of page 9 from 45 pages