Detailed information of deep learning profile BP000193.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000193.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR244KEW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.07 0.02 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.12 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.20 0.08 0.06 0.19 0.14 -0.00 0.07 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4143 3695 3610 4842 5994 4492 3585 4116 3637 3909 4433 4518 4546 4843 4102 2795 4179 4888 2068 788 11436 1473 3129 14471 360 7115 1231 316 468 2882 7184 1733 2672 6321 3196 5244 4053 4614 4045 3949 4746 5630 3835 4638 4882 5246 4807 4694 4714 4707 ]
C [ 4372 3635 4627 5438 3930 3766 3367 4561 6761 6085 5437 5026 4845 4378 4764 5915 3932 2292 13245 16999 1164 9479 6589 578 67 149 743 75 784 13157 1029 9243 5991 4382 3881 3571 3362 4793 5925 6882 5723 3891 4949 4304 4251 4153 4358 4429 4681 4629 ]
G [ 4650 5909 5801 3696 4387 4421 4245 4335 3268 3611 4172 4435 4372 3836 4666 3038 5892 7803 1527 291 2937 6602 1760 1854 17697 10858 10297 17674 15554 711 9066 5275 1963 5393 4676 3956 7519 4953 4673 2912 3152 4918 5039 5014 4780 4214 4264 4998 4846 4827 ]
T [ 5139 5065 4266 4328 3993 5625 7107 5292 4638 4699 4262 4325 4541 5247 4772 6556 4301 3321 1464 226 2767 750 6826 1401 180 182 6033 239 1498 1554 1025 2053 7678 2208 6551 5533 3370 3944 3661 4561 4683 3865 4481 4348 4391 4691 4875 4183 4063 4141 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.01 0.09 -0.04 0.07 -0.07 -0.04 -0.06 -0.01 0.03 -0.02 -0.02 0.03 -0.02 0.02 -0.00 0.01 ]
C [ 0.03 0.02 0.02 0.03 0.06 0.05 -0.01 0.13 0.20 -0.02 0.13 0.06 0.02 -0.02 -0.06 0.01 -0.04 -0.03 0.17 -0.01 0.08 0.06 0.05 0.02 0.02 0.02 0.03 ]
G [ 0.01 0.02 0.02 0.03 0.01 0.05 0.07 -0.02 -0.03 0.10 0.07 -0.01 0.03 0.20 0.15 0.12 0.20 0.16 -0.03 0.16 0.06 -0.00 0.04 0.03 0.01 0.05 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.08 -0.03 -0.05 0.07 -0.03 -0.04 -0.09 0.04 -0.05 0.02 -0.02 -0.07 -0.01 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3118

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 520

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 307

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 217

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 172

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages