Detailed information of deep learning profile BP000193.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000193.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR244KEW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.07 -0.00 0.14 0.19 0.06 0.08 0.20 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.12 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.02 0.07 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4141 4063 4183 4875 4691 4391 4348 4481 3865 4683 4561 3661 3944 3370 5533 6551 2208 7678 2053 1025 1554 1498 239 6033 182 180 1401 6826 750 2767 226 1464 3321 4301 6556 4772 5247 4541 4325 4262 4699 4638 5292 7107 5625 3993 4328 4266 5065 5139 ]
C [ 4827 4846 4998 4264 4214 4780 5014 5039 4918 3152 2912 4673 4953 7519 3956 4676 5393 1963 5275 9066 711 15554 17674 10297 10858 17697 1854 1760 6602 2937 291 1527 7803 5892 3038 4666 3836 4372 4435 4172 3611 3268 4335 4245 4421 4387 3696 5801 5909 4650 ]
G [ 4629 4681 4429 4358 4153 4251 4304 4949 3891 5723 6882 5925 4793 3362 3571 3881 4382 5991 9243 1029 13157 784 75 743 149 67 578 6589 9479 1164 16999 13245 2292 3932 5915 4764 4378 4845 5026 5437 6085 6761 4561 3367 3766 3930 5438 4627 3635 4372 ]
T [ 4707 4714 4694 4807 5246 4882 4638 3835 5630 4746 3949 4045 4614 4053 5244 3196 6321 2672 1733 7184 2882 468 316 1231 7115 360 14471 3129 1473 11436 788 2068 4888 4179 2795 4102 4843 4546 4518 4433 3909 3637 4116 3585 4492 5994 4842 3610 3695 4143 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.01 -0.07 -0.02 0.02 -0.05 0.04 -0.09 -0.04 -0.03 0.07 -0.05 -0.03 -0.08 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.05 0.01 0.03 0.04 -0.00 0.06 0.16 -0.03 0.16 0.20 0.12 0.15 0.20 0.03 -0.01 0.07 0.10 -0.03 -0.02 0.07 0.05 0.01 0.03 0.02 0.02 0.01 ]
G [ 0.03 0.02 0.02 0.02 0.05 0.06 0.08 -0.01 0.17 -0.03 -0.04 0.01 -0.06 -0.02 0.02 0.06 0.13 -0.02 0.20 0.13 -0.01 0.05 0.06 0.03 0.02 0.02 0.03 ]
T [ 0.01 -0.00 0.02 -0.02 0.03 -0.02 -0.02 0.03 -0.01 -0.06 -0.04 -0.07 0.07 -0.04 0.09 -0.01 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3118

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 520

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 307

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 217

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 172

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
BP000082.1 CTCF ENCSR000DTR epithelial cell of esophagus Homo sapiens MA0139.2
BP000083.1 CTCF ENCSR000DTW HEK293 Homo sapiens MA0139.2
BP000084.1 CTCF ENCSR000DUB HeLa-S3 Homo sapiens MA0139.2
BP000085.1 CTCF ENCSR000DUG HepG2 Homo sapiens MA0139.2
BP000086.1 CTCF ENCSR000DUH foreskin fibroblast Homo sapiens MA0139.2
BP000087.1 CTCF ENCSR000DUM HFF-Myc Homo sapiens MA0139.2
BP000088.1 CTCF ENCSR000DUP HL-60 Homo sapiens MA0139.2
BP000089.1 CTCF ENCSR000DUS mammary epithelial cell Homo sapiens MA0139.2
BP000090.1 CTCF ENCSR000DUU fibroblast of mammary gland Homo sapiens MA0139.2
Showing 10 profiles of page 9 from 45 pages