Detailed information of deep learning profile BP000188.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000188.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR234HEM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.03 -0.00 0.07 0.10 0.03 0.05 0.11 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.06 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.12 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3676 3611 3680 4854 4489 4087 4038 4100 3268 4335 4172 3223 3315 3034 4822 5830 1774 6788 1614 855 1532 1383 257 6045 173 138 787 6180 465 1910 100 933 2898 3813 7015 4592 5360 4252 3721 3532 4487 4140 5284 8014 5664 3018 3812 3574 4914 4875 ]
C [ 4669 4713 5127 3929 3759 4342 4766 4648 4759 2542 2308 4002 4643 7441 3760 4810 4898 1991 5355 8254 841 14268 16307 9595 10163 16697 1365 1241 5603 2518 76 958 7713 6403 2378 4497 3355 3698 3969 3775 3003 2509 3975 3795 4166 4293 2885 6297 6450 4425 ]
G [ 4481 4429 4159 3934 3762 4134 4140 4990 3353 5834 7200 5937 4955 2945 3310 3489 4229 5987 8380 1030 12381 904 246 617 138 86 492 7036 10252 622 16649 13700 1721 3502 5566 4153 3832 4650 5133 5669 6413 7725 4108 2465 3145 3481 5767 4522 2835 4296 ]
T [ 4295 4368 4155 4404 5111 4558 4177 3383 5741 4410 3441 3959 4208 3701 5229 2992 6220 2355 1772 6982 2367 566 311 864 6647 200 14477 2664 801 12071 296 1530 4789 3403 2162 3879 4574 4521 4298 4145 3218 2747 3754 2847 4146 6329 4657 2728 2922 3525 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.02 0.02 -0.01 -0.04 -0.01 0.01 -0.03 0.02 -0.05 -0.02 -0.03 0.04 -0.04 -0.02 -0.05 -0.02 -0.01 -0.00 0.01 0.01 0.01 ]
C [ 0.00 0.02 -0.00 0.01 0.02 -0.01 0.03 0.08 -0.02 0.08 0.11 0.06 0.08 0.11 0.02 -0.01 0.04 0.06 -0.01 -0.01 0.04 0.03 -0.00 0.01 0.00 ]
G [ 0.01 -0.00 0.00 0.00 0.01 0.02 0.03 -0.02 0.08 -0.02 -0.02 0.00 -0.05 -0.01 -0.01 0.03 0.07 -0.03 0.12 0.08 -0.01 0.02 0.03 0.01 0.01 ]
T [ 0.00 0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.00 -0.03 -0.03 -0.04 0.04 -0.03 0.06 -0.01 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 278

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 194

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 153

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 118

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages