Detailed information of deep learning profile BP000188.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000188.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR234HEM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.12 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.06 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.11 0.05 0.03 0.10 0.07 -0.00 0.03 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3525 2922 2728 4657 6329 4146 2847 3754 2747 3218 4145 4298 4521 4574 3879 2162 3403 4789 1530 296 12071 801 2664 14477 200 6647 864 311 566 2367 6982 1772 2355 6220 2992 5229 3701 4208 3959 3441 4410 5741 3383 4177 4558 5111 4404 4155 4368 4295 ]
C [ 4296 2835 4522 5767 3481 3145 2465 4108 7725 6413 5669 5133 4650 3832 4153 5566 3502 1721 13700 16649 622 10252 7036 492 86 138 617 246 904 12381 1030 8380 5987 4229 3489 3310 2945 4955 5937 7200 5834 3353 4990 4140 4134 3762 3934 4159 4429 4481 ]
G [ 4425 6450 6297 2885 4293 4166 3795 3975 2509 3003 3775 3969 3698 3355 4497 2378 6403 7713 958 76 2518 5603 1241 1365 16697 10163 9595 16307 14268 841 8254 5355 1991 4898 4810 3760 7441 4643 4002 2308 2542 4759 4648 4766 4342 3759 3929 5127 4713 4669 ]
T [ 4875 4914 3574 3812 3018 5664 8014 5284 4140 4487 3532 3721 4252 5360 4592 7015 3813 2898 933 100 1910 465 6180 787 138 173 6045 257 1383 1532 855 1614 6788 1774 5830 4822 3034 3315 3223 4172 4335 3268 4100 4038 4087 4489 4854 3680 3611 3676 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.01 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.01 0.06 -0.03 0.04 -0.04 -0.03 -0.03 -0.00 0.02 -0.01 -0.01 0.02 -0.01 0.01 0.00 0.00 ]
C [ 0.01 0.01 0.03 0.02 -0.01 0.08 0.12 -0.03 0.07 0.03 -0.01 -0.01 -0.05 0.00 -0.02 -0.02 0.08 -0.02 0.03 0.02 0.01 0.00 0.00 -0.00 0.01 ]
G [ 0.00 0.01 -0.00 0.03 0.04 -0.01 -0.01 0.06 0.04 -0.01 0.02 0.11 0.08 0.06 0.11 0.08 -0.02 0.08 0.03 -0.01 0.02 0.01 -0.00 0.02 0.00 ]
T [ 0.01 0.01 0.01 -0.00 -0.01 -0.02 -0.05 -0.02 -0.04 0.04 -0.03 -0.02 -0.05 0.02 -0.03 0.01 -0.01 -0.04 -0.01 0.02 -0.02 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 278

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 194

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 153

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 118

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages