Detailed information of deep learning profile BP000187.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in right atrium auricular region using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000187.1
Cell line/tissue: right atrium auricular region
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR232OFD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.16 -0.00 0.05 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.07 0.05 0.15 0.09 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4349 3910 3717 4974 6399 4688 3750 4335 3652 4010 4550 4730 4739 4824 4132 2893 4317 5050 2030 502 11837 1463 3162 14575 359 6409 1721 499 885 3365 6762 2096 3127 6313 3425 5354 4139 4767 4285 4226 4796 5624 4003 4754 4897 5203 4983 4972 4808 4867 ]
C [ 4573 3747 4937 5850 4108 4072 3571 4738 7331 6402 5775 5281 4947 4612 5336 6385 4309 2430 14025 18108 1352 9860 7065 670 122 247 955 239 1435 12599 1621 9170 5877 4521 4161 3940 3749 4907 6098 6746 5825 4139 5150 4629 4506 4494 4550 4679 4875 4734 ]
G [ 4824 6224 6128 3881 4597 4697 4466 4619 3434 3794 4334 4599 4490 4113 4746 3193 5904 7997 1644 291 2685 6971 1877 2286 18379 12079 10576 17813 14990 1157 9239 5285 2433 5637 5047 4274 7542 5241 4830 3315 3628 5147 5220 5257 5079 4586 4661 5169 5146 5062 ]
T [ 5322 5187 4286 4363 3964 5611 7281 5376 4651 4862 4409 4458 4892 5519 4854 6597 4538 3591 1369 167 3194 774 6964 1537 208 333 5816 517 1758 1947 1446 2517 7631 2597 6435 5500 3638 4153 3855 4781 4819 4158 4695 4428 4586 4785 4874 4248 4239 4405 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.08 -0.06 0.04 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.11 0.16 -0.01 0.11 0.05 -0.01 -0.01 -0.06 0.01 -0.03 -0.02 0.12 -0.01 0.06 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.04 0.06 -0.02 -0.02 0.07 0.05 -0.02 0.03 0.16 0.12 0.09 0.16 0.11 -0.02 0.11 0.05 -0.00 0.03 0.02 0.00 0.04 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.03 -0.05 0.05 -0.03 -0.04 -0.07 0.02 -0.04 0.00 -0.02 -0.06 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 835

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 433

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 391

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 369

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 265

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 246

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages