Detailed information of deep learning profile BP000187.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in right atrium auricular region using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000187.1
Cell line/tissue: right atrium auricular region
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR232OFD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.09 0.15 0.05 0.07 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.16 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4405 4239 4248 4874 4785 4586 4428 4695 4158 4819 4781 3855 4153 3638 5500 6435 2597 7631 2517 1446 1947 1758 517 5816 333 208 1537 6964 774 3194 167 1369 3591 4538 6597 4854 5519 4892 4458 4409 4862 4651 5376 7281 5611 3964 4363 4286 5187 5322 ]
C [ 5062 5146 5169 4661 4586 5079 5257 5220 5147 3628 3315 4830 5241 7542 4274 5047 5637 2433 5285 9239 1157 14990 17813 10576 12079 18379 2286 1877 6971 2685 291 1644 7997 5904 3193 4746 4113 4490 4599 4334 3794 3434 4619 4466 4697 4597 3881 6128 6224 4824 ]
G [ 4734 4875 4679 4550 4494 4506 4629 5150 4139 5825 6746 6098 4907 3749 3940 4161 4521 5877 9170 1621 12599 1435 239 955 247 122 670 7065 9860 1352 18108 14025 2430 4309 6385 5336 4612 4947 5281 5775 6402 7331 4738 3571 4072 4108 5850 4937 3747 4573 ]
T [ 4867 4808 4972 4983 5203 4897 4754 4003 5624 4796 4226 4285 4767 4139 5354 3425 6313 3127 2096 6762 3365 885 499 1721 6409 359 14575 3162 1463 11837 502 2030 5050 4317 2893 4132 4824 4739 4730 4550 4010 3652 4335 3750 4688 6399 4974 3717 3910 4349 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.02 0.00 -0.04 0.02 -0.07 -0.04 -0.03 0.05 -0.05 -0.03 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.00 0.05 0.11 -0.02 0.11 0.16 0.09 0.12 0.16 0.03 -0.02 0.05 0.07 -0.02 -0.02 0.06 0.04 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.06 -0.01 0.12 -0.02 -0.03 0.01 -0.06 -0.01 -0.01 0.05 0.11 -0.01 0.16 0.11 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.04 -0.06 0.08 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 835

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 433

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 391

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 369

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 265

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 246

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages