Detailed information of deep learning profile BP000185.1

  1. Home
  2. Deep Learning Profile > BP000185.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in prostate gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000185.1
Cell line/tissue: prostate gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR230ORT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.12 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.11 0.05 0.03 0.11 0.07 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 3148 2701 2426 4176 5768 3902 2582 3498 2493 2907 3787 4023 4198 4287 3616 1853 3025 4447 1301 283 11570 635 2285 14456 136 6327 613 181 398 1869 6400 1407 2011 5828 2586 5098 3259 3725 3599 2978 4008 5499 2914 3828 4176 4885 4091 3739 4058 3952 ]
C [ 4450 2922 4541 5943 3599 3170 2603 4100 7726 6518 5773 5261 4641 3735 4021 5649 3291 1588 13639 16092 483 10314 7475 468 70 94 613 73 496 13069 555 8751 6124 4340 3652 3340 2954 5135 6280 7666 6165 3193 5188 4227 4142 3808 4027 4250 4493 4610 ]
G [ 4426 6317 6384 2940 4365 4246 3822 3961 2509 2988 3775 3989 3845 3466 4685 2171 6763 7925 813 97 3089 5286 1279 1013 16274 10034 9394 16153 14532 459 9070 5233 1919 5053 4815 3712 7621 4695 3764 2166 2327 4970 4743 4792 4361 3789 3867 5210 4783 4662 ]
T [ 4520 4604 3193 3485 2812 5226 7537 4985 3816 4131 3209 3271 3860 5056 4222 6871 3465 2584 791 72 1402 309 5505 607 64 89 5924 137 1118 1147 519 1153 6490 1323 5491 4394 2710 2989 2901 3734 4044 2882 3699 3697 3865 4062 4559 3345 3210 3320 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.01 -0.01 -0.02 0.03 -0.02 -0.02 0.07 -0.03 0.04 -0.05 -0.03 -0.02 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.00 -0.00 ]
C [ 0.02 0.01 0.01 0.01 0.04 0.03 -0.01 0.08 0.12 -0.03 0.07 0.04 -0.00 -0.02 -0.05 0.01 -0.03 -0.03 0.08 -0.03 0.04 0.02 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.01 0.02 0.04 -0.02 -0.02 0.06 0.03 -0.01 0.02 0.11 0.09 0.06 0.11 0.08 -0.02 0.09 0.03 -0.00 0.02 0.01 -0.00 0.02 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.02 -0.06 -0.03 -0.04 0.03 -0.04 -0.04 -0.07 0.02 -0.04 -0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 327

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 61

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages