Detailed information of deep learning profile BP000185.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in prostate gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000185.1
Cell line/tissue: prostate gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR230ORT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.07 0.11 0.03 0.05 0.11 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.12 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3320 3210 3345 4559 4062 3865 3697 3699 2882 4044 3734 2901 2989 2710 4394 5491 1323 6490 1153 519 1147 1118 137 5924 89 64 607 5505 309 1402 72 791 2584 3465 6871 4222 5056 3860 3271 3209 4131 3816 4985 7537 5226 2812 3485 3193 4604 4520 ]
C [ 4662 4783 5210 3867 3789 4361 4792 4743 4970 2327 2166 3764 4695 7621 3712 4815 5053 1919 5233 9070 459 14532 16153 9394 10034 16274 1013 1279 5286 3089 97 813 7925 6763 2171 4685 3466 3845 3989 3775 2988 2509 3961 3822 4246 4365 2940 6384 6317 4426 ]
G [ 4610 4493 4250 4027 3808 4142 4227 5188 3193 6165 7666 6280 5135 2954 3340 3652 4340 6124 8751 555 13069 496 73 613 94 70 468 7475 10314 483 16092 13639 1588 3291 5649 4021 3735 4641 5261 5773 6518 7726 4100 2603 3170 3599 5943 4541 2922 4450 ]
T [ 3952 4058 3739 4091 4885 4176 3828 2914 5499 4008 2978 3599 3725 3259 5098 2586 5828 2011 1407 6400 1869 398 181 613 6327 136 14456 2285 635 11570 283 1301 4447 3025 1853 3616 4287 4198 4023 3787 2907 2493 3498 2582 3902 5768 4176 2426 2701 3148 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.03 0.02 -0.01 -0.05 -0.02 -0.00 -0.04 0.02 -0.07 -0.04 -0.04 0.03 -0.04 -0.03 -0.06 -0.02 -0.01 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.02 -0.00 0.01 0.02 -0.00 0.03 0.09 -0.02 0.08 0.11 0.06 0.09 0.11 0.02 -0.01 0.03 0.06 -0.02 -0.02 0.04 0.02 -0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.01 0.02 0.04 -0.03 0.08 -0.03 -0.03 0.01 -0.05 -0.02 -0.00 0.04 0.07 -0.03 0.12 0.08 -0.01 0.03 0.04 0.01 0.01 0.01 0.02 ]
T [ -0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.02 -0.03 -0.05 0.04 -0.03 0.07 -0.02 -0.02 0.03 -0.02 -0.01 0.01 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 327

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 61

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
BP000082.1 CTCF ENCSR000DTR epithelial cell of esophagus Homo sapiens MA0139.2
BP000083.1 CTCF ENCSR000DTW HEK293 Homo sapiens MA0139.2
BP000084.1 CTCF ENCSR000DUB HeLa-S3 Homo sapiens MA0139.2
BP000085.1 CTCF ENCSR000DUG HepG2 Homo sapiens MA0139.2
BP000086.1 CTCF ENCSR000DUH foreskin fibroblast Homo sapiens MA0139.2
BP000087.1 CTCF ENCSR000DUM HFF-Myc Homo sapiens MA0139.2
BP000088.1 CTCF ENCSR000DUP HL-60 Homo sapiens MA0139.2
BP000089.1 CTCF ENCSR000DUS mammary epithelial cell Homo sapiens MA0139.2
BP000090.1 CTCF ENCSR000DUU fibroblast of mammary gland Homo sapiens MA0139.2
Showing 10 profiles of page 9 from 45 pages