Detailed information of deep learning profile BP000184.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000184.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR225YGX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.13 0.04 0.05 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3715 3638 3692 4386 4205 3893 3977 3999 3460 4219 4052 3174 3448 3030 4770 5720 2041 6606 1853 993 1615 1417 339 5197 237 125 1011 5972 585 2392 193 1155 2938 3983 5839 4289 4851 4155 3851 3768 4208 3964 4821 6744 5101 3328 3715 3638 4479 4690 ]
C [ 4433 4413 4486 3961 3783 4275 4405 4428 4427 2950 2869 4147 4543 6650 3707 4365 4735 2079 4899 8055 864 13425 15378 9124 9976 15859 1483 1502 5754 2719 201 1209 6921 5190 2567 4082 3448 3746 3990 3749 3053 2790 3737 3678 4039 3949 3163 5399 5649 4123 ]
G [ 4074 4108 3972 3776 3773 3902 3874 4439 3460 4966 5895 5262 4299 3062 3232 3339 3893 5130 7843 1130 11170 936 270 832 202 88 501 6152 8771 1024 15365 12332 1988 3562 5482 4305 3852 4290 4515 4860 5707 6554 3974 2837 3277 3408 5043 4246 3079 3862 ]
T [ 4118 4181 4190 4217 4579 4270 4084 3474 4993 4205 3524 3757 4050 3598 4631 2916 5671 2525 1745 6162 2691 562 353 1187 5925 268 13345 2714 1230 10205 581 1644 4493 3605 2452 3664 4189 4149 3984 3963 3372 3032 3808 3081 3923 5655 4419 3057 3133 3665 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.01 -0.03 0.02 -0.06 -0.03 -0.03 0.05 -0.04 -0.03 -0.06 -0.03 -0.01 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.00 0.04 0.10 -0.01 0.10 0.13 0.08 0.10 0.14 0.02 -0.01 0.05 0.07 -0.01 -0.02 0.05 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.03 0.05 -0.01 0.10 -0.02 -0.02 0.00 -0.04 -0.01 0.01 0.04 0.09 -0.03 0.15 0.10 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.04 -0.03 0.07 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1711

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 952

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 869

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 813

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 514

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 384

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 273

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages