Detailed information of deep learning profile BP000184.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000184.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR225YGX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.05 0.04 0.13 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3665 3133 3057 4419 5655 3923 3081 3808 3032 3372 3963 3984 4149 4189 3664 2452 3605 4493 1644 581 10205 1230 2714 13345 268 5925 1187 353 562 2691 6162 1745 2525 5671 2916 4631 3598 4050 3757 3524 4205 4993 3474 4084 4270 4579 4217 4190 4181 4118 ]
C [ 3862 3079 4246 5043 3408 3277 2837 3974 6554 5707 4860 4515 4290 3852 4305 5482 3562 1988 12332 15365 1024 8771 6152 501 88 202 832 270 936 11170 1130 7843 5130 3893 3339 3232 3062 4299 5262 5895 4966 3460 4439 3874 3902 3773 3776 3972 4108 4074 ]
G [ 4123 5649 5399 3163 3949 4039 3678 3737 2790 3053 3749 3990 3746 3448 4082 2567 5190 6921 1209 201 2719 5754 1502 1483 15859 9976 9124 15378 13425 864 8055 4899 2079 4735 4365 3707 6650 4543 4147 2869 2950 4427 4428 4405 4275 3783 3961 4486 4413 4433 ]
T [ 4690 4479 3638 3715 3328 5101 6744 4821 3964 4208 3768 3851 4155 4851 4289 5839 3983 2938 1155 193 2392 585 5972 1011 125 237 5197 339 1417 1615 993 1853 6606 2041 5720 4770 3030 3448 3174 4052 4219 3460 3999 3977 3893 4205 4386 3692 3638 3715 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.07 -0.03 0.04 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.10 0.15 -0.03 0.09 0.04 0.01 -0.01 -0.04 0.00 -0.02 -0.02 0.10 -0.01 0.05 0.03 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.01 0.07 0.05 -0.01 0.02 0.14 0.10 0.08 0.13 0.10 -0.01 0.10 0.04 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.01 -0.03 -0.06 -0.03 -0.04 0.05 -0.03 -0.03 -0.06 0.02 -0.03 0.01 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1711

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 952

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 869

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 813

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 514

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 384

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 273

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages