Detailed information of deep learning profile BP000183.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in omental fat pad using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000183.1
Cell line/tissue: omental fat pad
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR225OKX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.03 -0.00 0.06 0.09 0.03 0.04 0.09 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.02 -0.00 0.05 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.10 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2465 2378 2470 3399 3107 2872 2715 2745 2130 2990 2755 2114 2183 2019 3234 3996 1083 4764 941 468 918 885 123 4259 71 51 509 3889 264 1105 60 585 1989 2491 5196 3171 3772 2873 2372 2382 3034 2808 3794 5970 4026 2093 2643 2422 3502 3444 ]
C [ 3583 3783 4066 3088 2848 3379 3713 3653 3950 1836 1703 2903 3791 6026 2973 3822 3924 1601 4056 6922 483 10965 12349 7411 8133 12497 845 955 4054 2361 77 672 6241 5340 1696 3679 2698 2974 3094 2935 2231 1866 3121 2938 3293 3374 2164 5062 5021 3436 ]
G [ 3687 3527 3363 3144 3004 3312 3338 4151 2445 4825 5996 4925 3909 2209 2660 2899 3311 4744 6614 589 9886 495 81 525 79 50 419 6114 7939 464 12441 10461 1247 2660 4446 3128 2979 3710 4222 4576 5283 6256 3230 1947 2435 2777 4763 3506 2286 3523 ]
T [ 2988 3035 2824 3092 3764 3160 2957 2174 4198 3072 2269 2781 2840 2469 3856 2006 4405 1614 1112 4744 1436 378 170 528 4440 125 10950 1765 466 8793 145 1005 3246 2232 1385 2745 3274 3166 3035 2830 2175 1793 2578 1868 2969 4479 3153 1733 1914 2320 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.01 -0.02 0.02 -0.01 -0.04 -0.01 -0.01 -0.03 0.01 -0.05 -0.04 -0.03 0.03 -0.04 -0.03 -0.05 -0.02 -0.01 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.00 0.02 -0.00 0.01 0.01 -0.01 0.02 0.06 -0.02 0.07 0.09 0.05 0.07 0.09 0.01 -0.01 0.03 0.05 -0.02 -0.02 0.03 0.02 -0.01 0.01 0.00 0.01 0.00 ]
G [ 0.01 -0.00 -0.00 0.01 0.01 0.01 0.03 -0.02 0.07 -0.02 -0.02 0.01 -0.03 -0.01 -0.00 0.03 0.06 -0.03 0.10 0.07 -0.01 0.02 0.03 0.01 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.01 -0.02 -0.03 -0.04 0.03 -0.02 0.05 -0.01 -0.02 0.03 -0.03 -0.01 0.01 -0.01 -0.02 -0.00 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 302

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 148

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 138

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages