Detailed information of deep learning profile BP000183.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in omental fat pad using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000183.1
Cell line/tissue: omental fat pad
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR225OKX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.10 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.05 -0.00 0.02 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.09 0.04 0.03 0.09 0.06 -0.00 0.03 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 2320 1914 1733 3153 4479 2969 1868 2578 1793 2175 2830 3035 3166 3274 2745 1385 2232 3246 1005 145 8793 466 1765 10950 125 4440 528 170 378 1436 4744 1112 1614 4405 2006 3856 2469 2840 2781 2269 3072 4198 2174 2957 3160 3764 3092 2824 3035 2988 ]
C [ 3523 2286 3506 4763 2777 2435 1947 3230 6256 5283 4576 4222 3710 2979 3128 4446 2660 1247 10461 12441 464 7939 6114 419 50 79 525 81 495 9886 589 6614 4744 3311 2899 2660 2209 3909 4925 5996 4825 2445 4151 3338 3312 3004 3144 3363 3527 3687 ]
G [ 3436 5021 5062 2164 3374 3293 2938 3121 1866 2231 2935 3094 2974 2698 3679 1696 5340 6241 672 77 2361 4054 955 845 12497 8133 7411 12349 10965 483 6922 4056 1601 3924 3822 2973 6026 3791 2903 1703 1836 3950 3653 3713 3379 2848 3088 4066 3783 3583 ]
T [ 3444 3502 2422 2643 2093 4026 5970 3794 2808 3034 2382 2372 2873 3772 3171 5196 2491 1989 585 60 1105 264 3889 509 51 71 4259 123 885 918 468 941 4764 1083 3996 3234 2019 2183 2114 2755 2990 2130 2745 2715 2872 3107 3399 2470 2378 2465 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.03 0.03 -0.02 -0.01 0.05 -0.02 0.03 -0.04 -0.03 -0.02 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.01 0.03 0.02 -0.01 0.07 0.10 -0.03 0.06 0.03 -0.00 -0.01 -0.03 0.01 -0.02 -0.02 0.07 -0.02 0.03 0.01 0.01 0.01 -0.00 -0.00 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.02 0.03 -0.02 -0.02 0.05 0.03 -0.01 0.01 0.09 0.07 0.05 0.09 0.07 -0.02 0.06 0.02 -0.01 0.01 0.01 -0.00 0.02 0.00 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.02 -0.05 -0.03 -0.04 0.03 -0.03 -0.04 -0.05 0.01 -0.03 -0.01 -0.01 -0.04 -0.01 0.02 -0.02 0.01 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 302

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 148

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 138

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages