Detailed information of deep learning profile BP000182.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in brain using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000182.1
Cell line/tissue: brain
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR225KOS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.12 0.17 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.08 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5087 4847 4948 5517 5379 5053 5045 5212 4738 5522 5226 4285 4540 4157 6161 6986 3098 7943 2999 1849 2173 1926 563 5875 345 238 1753 7327 951 3964 357 1673 4003 4950 7123 5505 6257 5430 5053 5012 5471 5125 6123 8082 6315 4652 5030 4730 5826 5869 ]
C [ 5327 5497 5466 4890 4919 5495 5591 5580 5442 3925 3757 5432 5753 8140 4757 5578 5899 2704 5899 9546 1366 16552 19513 11922 13434 20229 2283 1917 7776 3138 474 1977 8294 6452 3470 5060 4386 4920 4860 4589 3978 3580 4817 4751 4946 4809 4117 6481 6538 5163 ]
G [ 5027 5185 5032 4912 4865 4744 4838 5332 4572 6077 7191 6423 5171 4068 4013 4322 4856 6748 9458 2050 13044 1517 268 922 218 73 559 8110 10166 1539 18808 14657 2813 4700 6759 5603 4899 5300 5551 6110 6960 7958 5140 3846 4289 4545 6065 5345 4107 4900 ]
T [ 5487 5399 5482 5609 5765 5636 5454 4804 6176 5404 4754 4788 5464 4563 5997 4042 7075 3533 2572 7483 4345 933 584 2209 6931 388 16333 3574 2035 12287 1289 2621 5818 4826 3576 4760 5386 5278 5464 5217 4519 4265 4848 4249 5378 6922 5716 4372 4457 4996 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.00 -0.04 0.02 -0.08 -0.04 -0.03 0.06 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.02 0.01 ]
C [ 0.02 0.05 0.01 0.03 0.04 0.00 0.05 0.13 -0.01 0.14 0.18 0.11 0.14 0.19 0.03 -0.02 0.05 0.07 -0.02 -0.02 0.06 0.04 0.00 0.02 0.01 0.02 ]
G [ 0.02 0.01 0.01 0.01 0.04 0.05 0.07 -0.00 0.13 -0.02 -0.04 0.01 -0.07 -0.03 -0.01 0.06 0.12 -0.01 0.19 0.12 -0.00 0.04 0.05 0.02 0.01 0.01 ]
T [ 0.00 0.00 0.02 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.06 -0.05 0.09 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.00 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 23

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages