Detailed information of deep learning profile BP000182.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in brain using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000182.1
Cell line/tissue: brain
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR225KOS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.08 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.17 0.12 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4996 4457 4372 5716 6922 5378 4249 4848 4265 4519 5217 5464 5278 5386 4760 3576 4826 5818 2621 1289 12287 2035 3574 16333 388 6931 2209 584 933 4345 7483 2572 3533 7075 4042 5997 4563 5464 4788 4754 5404 6176 4804 5454 5636 5765 5609 5482 5399 5487 ]
C [ 4900 4107 5345 6065 4545 4289 3846 5140 7958 6960 6110 5551 5300 4899 5603 6759 4700 2813 14657 18808 1539 10166 8110 559 73 218 922 268 1517 13044 2050 9458 6748 4856 4322 4013 4068 5171 6423 7191 6077 4572 5332 4838 4744 4865 4912 5032 5185 5027 ]
G [ 5163 6538 6481 4117 4809 4946 4751 4817 3580 3978 4589 4860 4920 4386 5060 3470 6452 8294 1977 474 3138 7776 1917 2283 20229 13434 11922 19513 16552 1366 9546 5899 2704 5899 5578 4757 8140 5753 5432 3757 3925 5442 5580 5591 5495 4919 4890 5466 5497 5327 ]
T [ 5869 5826 4730 5030 4652 6315 8082 6123 5125 5471 5012 5053 5430 6257 5505 7123 4950 4003 1673 357 3964 951 7327 1753 238 345 5875 563 1926 2173 1849 2999 7943 3098 6986 6161 4157 4540 4285 5226 5522 4738 5212 5045 5053 5379 5517 4948 4847 5087 ]

Hypothetical CWM

   
A [ 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.09 -0.05 0.06 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.02 0.00 0.00 ]
C [ 0.01 0.01 0.02 0.05 0.04 -0.00 0.12 0.19 -0.01 0.12 0.06 -0.01 -0.03 -0.07 0.01 -0.04 -0.02 0.13 -0.00 0.07 0.05 0.04 0.01 0.01 0.01 0.02 ]
G [ 0.02 0.01 0.02 0.00 0.04 0.06 -0.02 -0.02 0.07 0.05 -0.02 0.03 0.19 0.14 0.11 0.18 0.14 -0.01 0.13 0.05 0.00 0.04 0.03 0.01 0.05 0.02 ]
T [ 0.01 0.02 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.06 -0.03 -0.04 -0.08 0.02 -0.04 0.00 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 23

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages