Detailed information of deep learning profile BP000181.1

  1. Home
  2. Deep Learning Profile > BP000181.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in upper lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000181.1
Cell line/tissue: upper lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR224WWI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.16 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.07 0.05 0.16 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3842 3301 3055 4777 6390 4378 3119 3997 3095 3476 4166 4413 4651 4649 4061 2377 3731 4897 1587 326 12017 933 2706 14722 196 6816 920 251 493 2650 7010 1820 2465 6314 3142 5183 3762 4403 4079 3663 4608 5788 3680 4380 4660 5176 4624 4490 4527 4495 ]
C [ 4119 2894 4429 5462 3467 3127 2642 4176 7256 6199 5509 4918 4466 3860 4290 5517 3440 1804 13666 16739 681 10191 6638 423 68 136 589 138 820 12338 1104 8575 5725 4112 3497 3223 3053 4806 5768 6862 5639 3458 4752 3936 3907 3851 3913 4043 4375 4376 ]
G [ 4337 6190 5977 2977 4089 4028 3668 3769 2602 2880 3732 3956 3739 3381 4204 2477 6021 7493 998 140 2439 5730 1192 1360 16979 10227 9708 16723 14601 736 8262 5229 1821 4934 4615 3804 7313 4479 4068 2404 2624 4564 4573 4735 4389 3716 3939 4810 4555 4567 ]
T [ 5030 4943 3867 4112 3382 5795 7899 5386 4375 4773 3921 4041 4472 5438 4773 6957 4136 3134 1077 123 2191 474 6792 823 85 149 6111 216 1414 1604 952 1704 7317 1968 6074 5118 3200 3640 3413 4399 4457 3518 4323 4277 4372 4585 4852 3985 3871 3890 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 -0.02 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.09 -0.05 0.05 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.01 0.12 0.17 -0.03 0.11 0.05 -0.01 -0.01 -0.06 0.00 -0.04 -0.03 0.11 -0.02 0.06 0.04 0.02 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 -0.00 0.04 0.05 -0.03 -0.01 0.08 0.05 -0.02 0.02 0.16 0.13 0.10 0.16 0.12 -0.02 0.11 0.04 -0.01 0.03 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.04 -0.07 -0.03 -0.06 0.06 -0.04 -0.05 -0.08 0.02 -0.04 0.00 -0.03 -0.06 -0.02 0.03 -0.04 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1175

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 257

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 134

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages