Detailed information of deep learning profile BP000181.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in upper lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000181.1
Cell line/tissue: upper lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR224WWI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.16 0.05 0.07 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.16 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 3890 3871 3985 4852 4585 4372 4277 4323 3518 4457 4399 3413 3640 3200 5118 6074 1968 7317 1704 952 1604 1414 216 6111 149 85 823 6792 474 2191 123 1077 3134 4136 6957 4773 5438 4472 4041 3921 4773 4375 5386 7899 5795 3382 4112 3867 4943 5030 ]
C [ 4567 4555 4810 3939 3716 4389 4735 4573 4564 2624 2404 4068 4479 7313 3804 4615 4934 1821 5229 8262 736 14601 16723 9708 10227 16979 1360 1192 5730 2439 140 998 7493 6021 2477 4204 3381 3739 3956 3732 2880 2602 3769 3668 4028 4089 2977 5977 6190 4337 ]
G [ 4376 4375 4043 3913 3851 3907 3936 4752 3458 5639 6862 5768 4806 3053 3223 3497 4112 5725 8575 1104 12338 820 138 589 136 68 423 6638 10191 681 16739 13666 1804 3440 5517 4290 3860 4466 4918 5509 6199 7256 4176 2642 3127 3467 5462 4429 2894 4119 ]
T [ 4495 4527 4490 4624 5176 4660 4380 3680 5788 4608 3663 4079 4403 3762 5183 3142 6314 2465 1820 7010 2650 493 251 920 6816 196 14722 2706 933 12017 326 1587 4897 3731 2377 4061 4649 4651 4413 4166 3476 3095 3997 3119 4378 6390 4777 3055 3301 3842 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.04 0.03 -0.02 -0.06 -0.03 0.00 -0.04 0.02 -0.08 -0.05 -0.04 0.06 -0.06 -0.03 -0.07 -0.04 -0.01 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.03 -0.01 0.04 0.11 -0.02 0.12 0.16 0.10 0.13 0.16 0.02 -0.02 0.05 0.08 -0.01 -0.03 0.05 0.04 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.02 0.04 0.06 -0.02 0.11 -0.03 -0.04 0.00 -0.06 -0.01 -0.01 0.05 0.11 -0.03 0.17 0.12 -0.01 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.05 -0.05 0.09 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1175

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 257

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 134

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages