Detailed information of deep learning profile BP000180.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in sigmoid colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000180.1
Cell line/tissue: sigmoid colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR222SQE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.05 0.10 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.05 -0.00 0.01 0.01 0.00 -0.00 ]
G [ -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.10 0.04 0.03 0.09 0.06 -0.00 0.03 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3989 3429 3095 5088 6757 4502 3179 4097 3258 3714 4426 4718 4799 4877 4224 2451 3955 5168 1641 408 12609 951 2797 15344 258 7167 1027 382 597 2826 7444 1945 2538 6581 3291 5444 3956 4516 4270 3755 4700 6031 3683 4536 4878 5375 4978 4561 4785 4674 ]
C [ 4178 2931 4520 5789 3537 3164 2647 4275 7726 6408 5719 5012 4572 3847 4509 5754 3514 1794 14216 17299 681 10594 7057 383 78 142 644 226 891 12520 1160 8624 5972 4282 3512 3278 3145 4923 6026 7111 5784 3414 4996 4128 3955 3828 3943 4274 4475 4513 ]
G [ 4444 6286 6262 2887 4117 4237 3675 3922 2472 2880 3819 3968 3869 3482 4287 2368 6202 7754 976 108 2470 5930 1125 1395 17478 10456 9842 17001 14873 887 8294 5540 2027 5073 4806 3912 7533 4705 4064 2451 2632 4801 4657 4817 4552 3865 3926 5032 4693 4609 ]
T [ 5323 5288 4057 4170 3523 6031 8433 5640 4478 4932 3970 4236 4694 5728 4914 7361 4263 3218 1101 119 2174 459 6955 812 120 169 6421 325 1573 1701 1036 1825 7397 1998 6325 5300 3300 3790 3574 4617 4818 3688 4598 4453 4549 4866 5087 4067 3981 4138 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.01 -0.01 0.02 -0.00 -0.02 0.03 -0.01 -0.01 0.06 -0.02 0.03 -0.03 -0.02 -0.02 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.00 0.01 0.03 0.02 -0.01 0.07 0.10 -0.02 0.06 0.03 -0.00 -0.02 -0.04 -0.00 -0.02 -0.02 0.07 -0.01 0.03 0.02 0.01 0.00 0.00 -0.00 0.01 ]
G [ 0.00 0.01 0.00 0.00 -0.00 0.02 0.03 -0.02 -0.02 0.05 0.03 -0.01 0.01 0.10 0.07 0.05 0.09 0.06 -0.02 0.06 0.02 -0.01 0.01 0.01 -0.00 0.02 0.00 ]
T [ -0.00 0.00 0.01 0.01 0.01 -0.00 -0.01 -0.02 -0.04 -0.02 -0.04 0.03 -0.03 -0.03 -0.04 0.01 -0.02 0.00 -0.01 -0.03 -0.01 0.02 -0.02 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 270

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 30

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages