Detailed information of deep learning profile BP000174.1

  1. Home
  2. Deep Learning Profile > BP000174.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in epithelial cell of prostate using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000174.1
Cell line/tissue: epithelial cell of prostate
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR196HOM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.08 0.12 0.04 0.06 0.13 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4454 4170 4190 4481 4390 4252 4277 4414 4150 4444 4373 3971 4014 3749 5161 6032 2820 6751 2871 1655 2091 1775 688 5270 518 372 2001 6583 966 3840 462 1436 3698 4362 5869 4561 5230 4583 4218 4341 4546 4322 5268 6701 5312 3941 4153 4010 5033 4942 ]
C [ 4692 5044 4847 4726 4648 4811 4870 4901 4825 4052 3919 5090 4846 6580 4328 4753 5435 2706 4808 8539 1452 13284 16488 9468 12036 17197 2679 2280 6646 2955 544 1923 7109 5232 3110 4410 4049 4380 4493 4091 3623 3253 4224 4312 4349 4266 3773 5895 5736 4543 ]
G [ 4614 4588 4518 4530 4616 4538 4552 4721 4325 5161 5798 5212 4680 4027 3952 4069 4400 5511 8298 2131 10889 1934 413 1098 369 200 727 6344 8675 1743 15908 12761 2521 4416 6181 5239 4462 4909 4872 5475 6162 7045 4519 3633 3952 4281 5644 4703 3629 4483 ]
T [ 4489 4447 4694 4512 4595 4648 4550 4213 4949 4592 4159 3976 4709 3893 4808 3395 5594 3281 2272 5924 3817 1256 660 2413 5326 480 12842 3042 1962 9711 1335 2129 4921 4239 3089 4039 4508 4377 4666 4342 3918 3629 4238 3603 4636 5761 4679 3641 3851 4281 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 -0.00 -0.03 0.02 -0.05 -0.03 -0.02 0.04 -0.04 -0.02 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.00 0.03 0.09 -0.02 0.10 0.13 0.07 0.10 0.13 0.02 -0.01 0.04 0.05 -0.02 -0.02 0.04 0.02 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.03 0.05 -0.02 0.09 -0.02 -0.03 -0.01 -0.05 -0.02 -0.01 0.04 0.08 -0.01 0.14 0.09 -0.01 0.03 0.04 0.02 0.01 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.02 0.02 -0.01 -0.04 -0.04 -0.04 0.03 -0.04 0.07 -0.01 -0.02 0.03 -0.02 -0.01 0.01 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1490

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 389

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 343

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 220

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 75

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages