Detailed information of deep learning profile BP000174.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in epithelial cell of prostate using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000174.1
Cell line/tissue: epithelial cell of prostate
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR196HOM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.13 0.06 0.04 0.12 0.08 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4281 3851 3641 4679 5761 4636 3603 4238 3629 3918 4342 4666 4377 4508 4039 3089 4239 4921 2129 1335 9711 1962 3042 12842 480 5326 2413 660 1256 3817 5924 2272 3281 5594 3395 4808 3893 4709 3976 4159 4592 4949 4213 4550 4648 4595 4512 4694 4447 4489 ]
C [ 4483 3629 4703 5644 4281 3952 3633 4519 7045 6162 5475 4872 4909 4462 5239 6181 4416 2521 12761 15908 1743 8675 6344 727 200 369 1098 413 1934 10889 2131 8298 5511 4400 4069 3952 4027 4680 5212 5798 5161 4325 4721 4552 4538 4616 4530 4518 4588 4614 ]
G [ 4543 5736 5895 3773 4266 4349 4312 4224 3253 3623 4091 4493 4380 4049 4410 3110 5232 7109 1923 544 2955 6646 2280 2679 17197 12036 9468 16488 13284 1452 8539 4808 2706 5435 4753 4328 6580 4846 5090 3919 4052 4825 4901 4870 4811 4648 4726 4847 5044 4692 ]
T [ 4942 5033 4010 4153 3941 5312 6701 5268 4322 4546 4341 4218 4583 5230 4561 5869 4362 3698 1436 462 3840 966 6583 2001 372 518 5270 688 1775 2091 1655 2871 6751 2820 6032 5161 3749 4014 3971 4373 4444 4150 4414 4277 4252 4390 4481 4190 4170 4454 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.02 0.03 -0.02 -0.01 0.07 -0.04 0.03 -0.04 -0.04 -0.04 -0.01 0.02 -0.02 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.01 0.02 0.04 0.03 -0.01 0.09 0.14 -0.01 0.08 0.04 -0.01 -0.02 -0.05 -0.01 -0.03 -0.02 0.09 -0.02 0.05 0.03 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.02 0.04 -0.02 -0.02 0.05 0.04 -0.01 0.02 0.13 0.10 0.07 0.13 0.10 -0.02 0.09 0.03 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.04 0.04 -0.02 -0.03 -0.05 0.02 -0.03 -0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1490

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 389

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 343

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 220

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 75

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages