Detailed information of deep learning profile BP000173.1

  1. Home
  2. Deep Learning Profile > BP000173.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in lower lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000173.1
Cell line/tissue: lower lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR195POA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.07 0.05 0.16 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4232 3769 3562 5150 6666 4730 3640 4405 3592 3923 4595 4725 4760 4845 4287 2768 4202 5120 1896 674 11832 1352 3004 15354 316 6747 1497 481 788 3233 7194 2139 2983 6475 3518 5498 4216 4832 4296 4135 4942 5877 4090 4760 4945 5330 4974 4896 4882 4833 ]
C [ 4739 3616 5101 6228 4172 3966 3418 4804 7902 6927 6095 5498 5147 4685 5209 6746 4362 2356 14711 18257 1317 10641 7329 733 143 356 1151 357 1519 13023 1678 9308 6227 4731 4155 4005 3735 5292 6198 7017 6063 4317 5356 4662 4740 4597 4659 4825 5034 4960 ]
G [ 4951 6606 6492 3674 4658 4763 4307 4466 3211 3657 4287 4653 4596 4162 4786 3140 6200 8351 1474 292 3372 6758 1811 2002 18814 12017 10787 18175 15381 1251 9240 5687 2493 5689 5243 4387 7898 5308 5017 3518 3582 5156 5259 5420 5130 4623 4758 5331 5249 5202 ]
T [ 5512 5443 4279 4382 3938 5975 8069 5759 4729 4927 4457 4558 4931 5742 5152 6780 4670 3607 1353 211 2913 683 7290 1345 161 314 5999 421 1746 1927 1322 2300 7731 2539 6518 5544 3585 4002 3923 4764 4847 4084 4729 4592 4619 4884 5043 4382 4269 4439 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.09 -0.05 0.04 -0.06 -0.05 -0.06 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.12 0.17 -0.02 0.11 0.05 -0.01 -0.01 -0.06 0.01 -0.04 -0.03 0.11 -0.02 0.06 0.04 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 0.00 0.04 0.06 -0.03 -0.02 0.07 0.04 -0.02 0.02 0.17 0.12 0.09 0.16 0.12 -0.02 0.12 0.04 -0.01 0.03 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.00 -0.02 -0.04 -0.08 -0.03 -0.06 0.05 -0.04 -0.04 -0.07 0.02 -0.04 0.01 -0.03 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 104

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages