Detailed information of deep learning profile BP000173.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in lower lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000173.1
Cell line/tissue: lower lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR195POA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.16 0.05 0.07 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4439 4269 4382 5043 4884 4619 4592 4729 4084 4847 4764 3923 4002 3585 5544 6518 2539 7731 2300 1322 1927 1746 421 5999 314 161 1345 7290 683 2913 211 1353 3607 4670 6780 5152 5742 4931 4558 4457 4927 4729 5759 8069 5975 3938 4382 4279 5443 5512 ]
C [ 5202 5249 5331 4758 4623 5130 5420 5259 5156 3582 3518 5017 5308 7898 4387 5243 5689 2493 5687 9240 1251 15381 18175 10787 12017 18814 2002 1811 6758 3372 292 1474 8351 6200 3140 4786 4162 4596 4653 4287 3657 3211 4466 4307 4763 4658 3674 6492 6606 4951 ]
G [ 4960 5034 4825 4659 4597 4740 4662 5356 4317 6063 7017 6198 5292 3735 4005 4155 4731 6227 9308 1678 13023 1519 357 1151 356 143 733 7329 10641 1317 18257 14711 2356 4362 6746 5209 4685 5147 5498 6095 6927 7902 4804 3418 3966 4172 6228 5101 3616 4739 ]
T [ 4833 4882 4896 4974 5330 4945 4760 4090 5877 4942 4135 4296 4832 4216 5498 3518 6475 2983 2139 7194 3233 788 481 1497 6747 316 15354 3004 1352 11832 674 1896 5120 4202 2768 4287 4845 4760 4725 4595 3923 3592 4405 3640 4730 6666 5150 3562 3769 4232 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.03 0.01 -0.04 0.02 -0.07 -0.04 -0.04 0.05 -0.06 -0.03 -0.08 -0.04 -0.02 -0.00 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.03 -0.01 0.04 0.12 -0.02 0.12 0.16 0.09 0.12 0.17 0.02 -0.02 0.04 0.07 -0.02 -0.03 0.06 0.04 0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.04 0.06 -0.02 0.11 -0.03 -0.04 0.01 -0.06 -0.01 -0.01 0.05 0.11 -0.02 0.17 0.12 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.06 -0.05 -0.06 0.04 -0.05 0.09 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 104

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages