Detailed information of deep learning profile BP000171.1

  1. Home
  2. Deep Learning Profile > BP000171.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000171.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR194JAU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.16 0.06 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.07 0.00 0.18 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5142 5020 5139 5790 5643 5355 5226 5406 4895 5577 5638 4556 4808 4337 6482 7579 3135 8700 3001 1716 2269 2012 634 6597 380 214 1718 8501 786 3528 251 1544 3960 5072 7981 5872 6519 5694 5240 5047 5638 5290 6412 8699 6619 4682 5104 5005 6125 6255 ]
C [ 5672 5736 5788 5266 5291 5764 5870 5917 5699 4193 3953 5569 5855 8391 4974 5612 6417 2945 6292 9995 1416 17047 20346 12536 14091 21308 2330 1857 7710 3222 307 1660 9066 6920 3486 5427 4640 5075 5191 4920 4120 3826 5178 4962 5271 5169 4341 6989 7147 5474 ]
G [ 5485 5444 5270 5181 5039 5133 5228 5822 4817 6483 7310 6741 5671 4310 4413 4659 5151 6655 10077 2038 14308 1711 390 989 225 83 597 8073 11736 1433 20530 16460 2767 4997 7192 5848 5134 5634 6052 6603 7482 8564 5277 3949 4583 4758 6566 5609 4137 5105 ]
T [ 5655 5754 5757 5717 5981 5702 5630 4809 6543 5701 5053 5088 5620 4916 6085 4104 7251 3654 2584 8205 3961 1184 584 1832 7258 349 17309 3523 1722 13771 866 2290 6161 4965 3295 4807 5661 5551 5471 5384 4714 4274 5087 4344 5481 7345 5943 4351 4545 5120 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.03 0.00 -0.04 0.02 -0.07 -0.04 -0.04 0.06 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 -0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.00 0.05 0.12 -0.02 0.12 0.17 0.11 0.13 0.18 0.03 -0.02 0.05 0.08 -0.03 -0.03 0.06 0.04 0.01 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.06 -0.01 0.12 -0.02 -0.04 0.01 -0.05 -0.02 -0.00 0.06 0.13 -0.01 0.19 0.12 -0.01 0.04 0.05 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.07 0.04 -0.05 0.09 -0.02 -0.03 0.04 -0.02 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1592

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 561

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 523

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 519

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 347

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 245

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 103

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 98

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages