Detailed information of deep learning profile BP000165.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000165.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR173IEA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.14 0.05 0.06 0.15 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4231 4333 4172 4006 4099 4633 4514 4301 4298 4347 3911 4624 4463 3555 3810 3269 5451 6317 2183 7624 1920 1136 1577 1465 250 6136 212 166 1393 6503 764 2948 292 1393 3358 4402 6290 4633 5103 4544 4160 4124 4561 4387 5118 7032 5458 3861 4280 4063 ]
C [ 4610 4391 4635 4660 4638 4144 4057 4597 4750 4719 4448 3009 2918 4498 4582 7165 3736 4517 5082 1630 4798 8491 626 14990 16910 9541 10647 17002 1809 1713 6517 2410 441 1567 7128 5470 2927 4310 3700 4077 4219 3958 3389 3088 4055 3997 4072 4109 3377 5519 ]
G [ 4403 4369 4330 4457 4300 4199 4154 4009 4114 4703 3858 5453 6332 5510 4627 3385 3318 3649 4175 5748 9140 999 12609 674 101 623 138 97 513 6461 8710 1303 16146 12548 2264 3740 5590 4624 4326 4557 4864 5210 5811 6590 4319 3118 3668 3779 5193 4466 ]
T [ 4350 4501 4457 4471 4557 4618 4869 4687 4432 3825 5377 4508 3881 4031 4575 3775 5089 3111 6154 2592 1736 6968 2782 465 333 1294 6597 329 13879 2917 1603 10933 715 2086 4844 3982 2787 4027 4465 4416 4351 4302 3833 3529 4102 3447 4396 5845 4744 3546 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.05 -0.03 0.01 -0.04 0.03 -0.07 -0.03 -0.03 0.05 -0.05 -0.02 -0.06 -0.03 -0.01 -0.00 0.02 0.01 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.04 0.11 -0.02 0.11 0.14 0.09 0.10 0.15 0.02 -0.01 0.04 0.06 -0.02 -0.02 0.04 0.03 0.00 0.01 ]
G [ 0.02 0.00 0.01 0.01 0.04 0.04 0.06 -0.02 0.12 -0.03 -0.04 -0.00 -0.05 -0.02 -0.01 0.04 0.10 -0.01 0.15 0.10 -0.01 0.03 0.04 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.05 -0.04 -0.06 0.05 -0.04 0.08 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 860

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 144

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages