Detailed information of deep learning profile BP000165.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000165.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR173IEA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.15 0.06 0.05 0.14 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3546 4744 5845 4396 3447 4102 3529 3833 4302 4351 4416 4465 4027 2787 3982 4844 2086 715 10933 1603 2917 13879 329 6597 1294 333 465 2782 6968 1736 2592 6154 3111 5089 3775 4575 4031 3881 4508 5377 3825 4432 4687 4869 4618 4557 4471 4457 4501 4350 ]
C [ 4466 5193 3779 3668 3118 4319 6590 5811 5210 4864 4557 4326 4624 5590 3740 2264 12548 16146 1303 8710 6461 513 97 138 623 101 674 12609 999 9140 5748 4175 3649 3318 3385 4627 5510 6332 5453 3858 4703 4114 4009 4154 4199 4300 4457 4330 4369 4403 ]
G [ 5519 3377 4109 4072 3997 4055 3088 3389 3958 4219 4077 3700 4310 2927 5470 7128 1567 441 2410 6517 1713 1809 17002 10647 9541 16910 14990 626 8491 4798 1630 5082 4517 3736 7165 4582 4498 2918 3009 4448 4719 4750 4597 4057 4144 4638 4660 4635 4391 4610 ]
T [ 4063 4280 3861 5458 7032 5118 4387 4561 4124 4160 4544 5103 4633 6290 4402 3358 1393 292 2948 764 6503 1393 166 212 6136 250 1465 1577 1136 1920 7624 2183 6317 5451 3269 3810 3555 4463 4624 3911 4347 4298 4301 4514 4633 4099 4006 4172 4333 4231 ]

Hypothetical CWM

   
A [ 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.08 -0.04 0.05 -0.06 -0.04 -0.05 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.04 0.03 -0.01 0.10 0.15 -0.01 0.10 0.04 -0.01 -0.02 -0.05 -0.00 -0.04 -0.03 0.12 -0.02 0.06 0.04 0.04 0.01 0.01 0.00 0.02 ]
G [ 0.01 0.00 0.03 0.04 -0.02 -0.02 0.06 0.04 -0.01 0.02 0.15 0.10 0.09 0.14 0.11 -0.02 0.11 0.04 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.05 -0.03 -0.03 -0.07 0.03 -0.04 0.01 -0.03 -0.05 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 860

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 144

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
BP000082.1 CTCF ENCSR000DTR epithelial cell of esophagus Homo sapiens MA0139.2
BP000083.1 CTCF ENCSR000DTW HEK293 Homo sapiens MA0139.2
BP000084.1 CTCF ENCSR000DUB HeLa-S3 Homo sapiens MA0139.2
BP000085.1 CTCF ENCSR000DUG HepG2 Homo sapiens MA0139.2
BP000086.1 CTCF ENCSR000DUH foreskin fibroblast Homo sapiens MA0139.2
BP000087.1 CTCF ENCSR000DUM HFF-Myc Homo sapiens MA0139.2
BP000088.1 CTCF ENCSR000DUP HL-60 Homo sapiens MA0139.2
BP000089.1 CTCF ENCSR000DUS mammary epithelial cell Homo sapiens MA0139.2
BP000090.1 CTCF ENCSR000DUU fibroblast of mammary gland Homo sapiens MA0139.2
Showing 10 profiles of page 9 from 45 pages