Detailed information of deep learning profile BP000164.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in stomach using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000164.1
Cell line/tissue: stomach
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR173AIR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 -0.00 0.05 0.01 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.13 0.05 0.03 0.12 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

A [ 4341 3833 3652 5260 6665 4780 3712 4468 3697 4117 4761 4874 5098 5112 4386 2782 4245 5352 1934 815 12597 1244 3026 15849 298 7347 1240 406 521 3029 7834 1977 2805 6878 3557 5782 4204 4925 4530 4015 5040 6249 4034 4917 5199 5613 5108 4937 5037 5007 ]
C [ 4429 3372 4815 5792 3898 3646 3113 4579 7508 6457 5790 5263 4920 4350 4688 6066 3958 2079 14517 17886 895 10683 7322 530 101 248 788 225 961 13420 1110 9164 6093 4584 3879 3535 3348 5149 6108 7277 6023 3708 5188 4392 4289 4145 4359 4572 4640 4733 ]
G [ 4773 6488 6245 3508 4534 4521 4161 4297 3068 3375 4104 4383 4205 3761 4797 2856 6239 8073 1324 203 2982 6612 1569 1557 18570 11263 10108 18133 16039 858 9044 5915 2245 5396 4986 4088 7960 5002 4556 2865 3035 5126 5125 5158 4901 4303 4370 5184 5152 4984 ]
T [ 5564 5414 4395 4547 4010 6160 8121 5763 4834 5158 4452 4587 4884 5884 5236 7403 4665 3603 1332 203 2633 568 7190 1171 138 249 6971 343 1586 1800 1119 2051 7964 2249 6685 5702 3595 4031 3913 4950 5009 4024 4760 4640 4718 5046 5270 4414 4278 4383 ]

Hypothetical CWM

A [ 0.01 -0.00 -0.02 -0.01 0.02 -0.00 -0.01 0.03 -0.02 -0.01 0.07 -0.03 0.04 -0.04 -0.03 -0.03 -0.01 0.02 -0.02 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.04 0.02 -0.01 0.09 0.14 -0.02 0.09 0.04 0.00 -0.02 -0.05 0.00 -0.02 -0.02 0.10 -0.02 0.05 0.03 0.02 0.00 0.00 0.00 0.01 ]
G [ 0.00 0.01 -0.00 0.03 0.04 -0.01 -0.02 0.06 0.04 -0.01 0.01 0.13 0.10 0.07 0.12 0.09 -0.03 0.09 0.03 -0.01 0.02 0.01 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.04 0.04 -0.03 -0.03 -0.06 0.02 -0.02 0.01 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 613

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 566

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 523

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 188

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages