Detailed information of deep learning profile BP000164.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in stomach using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000164.1
Cell line/tissue: stomach
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR173AIR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.12 0.03 0.05 0.13 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 0.05 -0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4383 4278 4414 5270 5046 4718 4640 4760 4024 5009 4950 3913 4031 3595 5702 6685 2249 7964 2051 1119 1800 1586 343 6971 249 138 1171 7190 568 2633 203 1332 3603 4665 7403 5236 5884 4884 4587 4452 5158 4834 5763 8121 6160 4010 4547 4395 5414 5564 ]
C [ 4984 5152 5184 4370 4303 4901 5158 5125 5126 3035 2865 4556 5002 7960 4088 4986 5396 2245 5915 9044 858 16039 18133 10108 11263 18570 1557 1569 6612 2982 203 1324 8073 6239 2856 4797 3761 4205 4383 4104 3375 3068 4297 4161 4521 4534 3508 6245 6488 4773 ]
G [ 4733 4640 4572 4359 4145 4289 4392 5188 3708 6023 7277 6108 5149 3348 3535 3879 4584 6093 9164 1110 13420 961 225 788 248 101 530 7322 10683 895 17886 14517 2079 3958 6066 4688 4350 4920 5263 5790 6457 7508 4579 3113 3646 3898 5792 4815 3372 4429 ]
T [ 5007 5037 4937 5108 5613 5199 4917 4034 6249 5040 4015 4530 4925 4204 5782 3557 6878 2805 1977 7834 3029 521 406 1240 7347 298 15849 3026 1244 12597 815 1934 5352 4245 2782 4386 5112 5098 4874 4761 4117 3697 4468 3712 4780 6665 5260 3652 3833 4341 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.01 -0.02 0.02 -0.06 -0.03 -0.03 0.04 -0.04 -0.02 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.01 0.02 -0.01 0.03 0.09 -0.03 0.09 0.12 0.07 0.10 0.13 0.01 -0.01 0.04 0.06 -0.02 -0.01 0.04 0.03 -0.00 0.01 0.00 ]
G [ 0.01 0.00 0.00 0.00 0.02 0.03 0.05 -0.02 0.10 -0.02 -0.02 0.00 -0.05 -0.02 0.00 0.04 0.09 -0.02 0.14 0.09 -0.01 0.02 0.04 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.02 0.02 -0.01 -0.03 -0.03 -0.04 0.04 -0.03 0.07 -0.01 -0.02 0.03 -0.01 -0.00 0.02 -0.01 -0.02 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 613

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 566

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 523

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 188

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages